RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SLC35G2Q8TBE7 412 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 STARD8Q92502 1023 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 AGAP3Q96P47 875 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 VPS35Q96QK1 796 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 ZNF768Q9H5H4 540 aaKnown RBP11.18□□□□□ -0.62
VPS28-214ENST00000531032 WASH6PQ9NQA3 447 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 POT1Q9NUX5 634 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 SLC30A1Q9Y6M5 507 aa11.18□□□□□ -0.62
VPS28-214ENST00000531032 MTX2O75431 263 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 NDST3O95803 873 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 MT-CYBP00156 380 aaPredicted RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 VIPP01282 170 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 SLC4A1P02730 911 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 PRKAR1AP10644 381 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 BRAFP15056 766 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 ZFXP17010 805 aaPredicted RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 TYRP1P17643 537 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 MC1RQ01726 317 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 TRIM14Q14142 442 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 PCSK7Q16549 785 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 KHDC1Q4VXA5 237 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 TEX44Q53QW1 395 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 LRRC38Q5VT99 294 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 AGAP9Q5VTM2 703 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 ABRAXAS1Q6UWZ7 409 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 NPNTQ6UXI9 565 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 PTRH1Q86Y79 214 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 TRIM48Q8IWZ4 208 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 OR8K1Q8NGG5 319 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 SPATA22Q8NHS9 363 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 APOBEC4Q8WW27 367 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 SRPK1Q96SB4 655 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 MAK16Q9BXY0 300 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 GPR63Q9BZJ6 419 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 ULBP3Q9BZM4 244 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 XPO4Q9C0E2 1151 aaKnown RBP11.17□□□□□ -0.62
VPS28-214ENST00000531032 EPN3Q9H201 632 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 DEF6Q9H4E7 631 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 GLOD4Q9HC38 313 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 SLC40A1Q9NP59 571 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 TMPRSS11EQ9UL52 423 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 DNAJC16Q9Y2G8 782 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 SPO11Q9Y5K1 396 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 RPS6KL1Q9Y6S9 549 aa11.17□□□□□ -0.62
VPS28-214ENST00000531032 FLNCQ14315 2725 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 COL12A1Q99715 3063 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 A0A0A6YYK5 440 aaPredicted RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 GOLGA6L3A6NEY3 463 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 PDZK1P1A8MUH7 402 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 AURKAO14965 403 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 CDK14O94921 469 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 KRT1P04264 644 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 AMD1P17707 334 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 PTPN3P26045 913 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 RPL10P27635 214 aaKnown RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 HMGCLP35914 325 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 CASRP41180 1078 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 CAPZBP47756 277 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 LEPRP48357 1165 aaKnown RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 FOXM1Q08050 763 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 IL11RAQ14626 422 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 PRKD1Q15139 912 aaPredicted RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 SEPT7Q16181 437 aaKnown RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 SKIDA1Q1XH10 827 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 PRSS42Q7Z5A4 293 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 C11orf96Q7Z7L8 435 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 RHOT2Q8IXI1 618 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 RBM12BQ8IXT5 1001 aaKnown RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 RNF214Q8ND24 703 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 C9orf43Q8TAL5 461 aaPredicted RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 DTX3LQ8TDB6 740 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 RSC1A1Q92681 617 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 TGM7Q96PF1 710 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 ZNHIT6Q9NWK9 470 aaKnown RBP11.16□□□□□ -0.62
VPS28-214ENST00000531032 EPHA6Q9UF33 1036 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 ANAPC2Q9UJX6 822 aa11.16□□□□□ -0.62
VPS28-214ENST00000531032 RELNP78509 3460 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 LOC285095A0A1B0GVY8 99 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 OR52A4PA6NMU1 304 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 AKR1B10O60218 316 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 PMPCBO75439 489 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 FGF5P12034 268 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 ZNF28P17035 718 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 VCLP18206 1134 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 TCN2P20062 427 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 IDSP22304 550 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 F8A1P23610 371 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 CD68P34810 354 aaPredicted RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 SLC1A1P43005 524 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 NOP2P46087 812 aaKnown RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 SEPHS1P49903 392 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 DRG2P55039 364 aaKnown RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 DYNLT1P63172 113 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 SH3BP2P78314 561 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 GPR18Q14330 331 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 DEFB109BQ30KR1 87 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 ATP13A5Q4VNC0 1218 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 ATP1A1-AS1Q5TC04 95 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 CCDC70Q6NSX1 233 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms