RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FAM151BQ6UXP7 276 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 WASH2PQ6VEQ5 465 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 LRRC8AQ8IWT6 810 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 FAM71DQ8N9W8 422 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 KCNE4Q8WWG9 221 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 ZNF514Q96K75 400 aaPredicted RBP20.33■□□□□ 0.85
VPS28-206ENST00000526734 OSGEPL1Q9H4B0 414 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 UCK1Q9HA47 277 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 WASH6PQ9NQA3 447 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 ACSL6Q9UKU0 697 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 R3HDM2Q9Y2K5 976 aaKnown RBP20.33■□□□□ 0.85
VPS28-206ENST00000526734 DNMT3AQ9Y6K1 912 aaPredicted RBP20.33■□□□□ 0.85
VPS28-206ENST00000526734 SCN8AQ9UQD0 1980 aa20.33■□□□□ 0.84
VPS28-206ENST00000526734 CHD6Q8TD26 2715 aa20.33■□□□□ 0.84
VPS28-206ENST00000526734 LILRA5A6NI73 299 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 PRR19A6NJB7 356 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 SNX2O60749 519 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 PRAMEF1O95521 474 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 LIMK2P53671 638 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 CCDC173Q0VFZ6 552 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 ZNF648Q5T619 568 aaPredicted RBP20.32■□□□□ 0.84
VPS28-206ENST00000526734 MEI1Q5TIA1 1274 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 AGAP9Q5VTM2 703 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 KCTD11Q693B1 232 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 PDZD3Q86UT5 571 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 TRAPPC5Q8IUR0 188 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 SPACA3Q8IXA5 215 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 AHCYL2Q96HN2 611 aaKnown RBP20.32■□□□□ 0.84
VPS28-206ENST00000526734 APOL2Q9BQE5 337 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 RDH14Q9HBH5 336 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 ARL5AQ9Y689 179 aa20.32■□□□□ 0.84
VPS28-206ENST00000526734 ERI2A8K979 691 aaKnown RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 GAPDHSO14556 408 aaPredicted RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 MTX2O75431 263 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 EML2O95834 649 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 XRCC1P18887 633 aaPredicted RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 IDSP22304 550 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 TLE3Q04726 772 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 LONRF2Q1L5Z9 754 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 KHDC1Q4VXA5 237 aaKnown RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 GPRC6AQ5T6X5 926 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 DENND5AQ6IQ26 1287 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 ABRAXAS1Q6UWZ7 409 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 SLC13A5Q86YT5 568 aaPredicted RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 ZNF547Q8IVP9 402 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 RBM12BQ8IXT5 1001 aaKnown RBP20.31■□□□□ 0.84
VPS28-206ENST00000526734 TRIM58Q8NG06 486 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 OR4K2Q8NGD2 314 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 ZNF398Q8TD17 642 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 ULK4Q96C45 1275 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 NUDT22Q9BRQ3 303 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 TMEM121Q9BTD3 319 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 ZMYND15Q9H091 742 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 SEMA6CQ9H3T2 930 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 CPNE7Q9UBL6 633 aa20.31■□□□□ 0.84
VPS28-206ENST00000526734 IGHV5-10-1A0A0J9YXX1 117 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 TCRBV7S2A1N4TA0A589 114 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 PDZK1P1A8MUH7 402 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 NVLO15381 856 aaKnown RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 BUD23O43709 281 aaKnown RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 LIASO43766 372 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 SRP72O76094 671 aaKnown RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 AP2A1O95782 977 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 ITPKBP27987 946 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 UBE2IP63279 158 aaKnown RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 DMPKQ09013 629 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 MSLNQ13421 630 aaPredicted RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 TMEM71Q6P5X7 295 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 WDR74Q6RFH5 385 aaPredicted RBP20.3■□□□□ 0.84
VPS28-206ENST00000526734 USP53Q70EK8 1073 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 TMPRSS9Q7Z410 1059 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 C11orf96Q7Z7L8 435 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 LINC00523Q86TU6 105 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 HEXDCQ8WVB3 486 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 MAIP1Q8WWC4 291 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 PRDM8Q9NQV8 689 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 POT1Q9NUX5 634 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 PISDQ9UG56 409 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 SLC23A2Q9UGH3 650 aa20.3■□□□□ 0.84
VPS28-206ENST00000526734 ADAMTS20P59510 1910 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 WDFY3Q8IZQ1 3526 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 TRBV23OR9-2A0A075B6M9 112 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A9O60656 530 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 METTL18O95568 372 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 THRAP10827 490 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A6P19224 532 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 MSH3P20585 1137 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 ITGALP20701 1170 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A1P22309 533 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A4P22310 534 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 AKT1P31749 480 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 UGT1A3P35503 534 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 HALP42357 657 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 ZNF140P52738 457 aaPredicted RBP20.29■□□□□ 0.84
VPS28-206ENST00000526734 GDF10P55107 478 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 NFATC2Q13469 925 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 OASLQ15646 514 aaKnown RBP20.29■□□□□ 0.84
VPS28-206ENST00000526734 PLA2G4EQ3MJ16 856 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 TMEM164Q5U3C3 297 aa20.29■□□□□ 0.84
VPS28-206ENST00000526734 AMZ2Q86W34 360 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms