RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TPM1P09493 284 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOXC6P09630 235 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LINGO3P0C6S8 592 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTAGE8P0CG41 777 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSPY4P0CV99 314 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSPY10P0CW01 314 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPBGLP0DKB5 382 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C8orf89P0DMQ9 161 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM225BP0DP42 221 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALPPL2P10696 532 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 UROSP10746 265 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 THRBP10828 461 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FGF3P11487 239 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT3P12035 628 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NEFHP12036 1026 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GZMAP12544 262 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYP4B1P13584 511 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACP5P13686 325 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC130P13994 396 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HGFP14210 728 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOXB2P14652 356 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ETS1P14921 441 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARSAP15289 507 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOSL2P15408 326 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSF2RAP15509 400 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AREGP15514 252 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PFKFB1P16118 471 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRLRP16471 622 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF182P17025 639 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GJA1P17302 382 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GM2AP17900 193 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IGFBP2P18065 325 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 VCLP18206 1134 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADRA2CP18825 462 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPORP19235 508 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITIH1P19827 911 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HIST1H2ADP20671 130 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FPR1P21462 350 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DRD4P21917 467 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CD9P21926 228 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MATN1P21941 496 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SFPQP23246 707 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYF6P23409 242 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLRA2P23416 452 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 JAK1P23458 1154 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AHCYP23526 432 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EEF1B2P24534 225 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACP1P24666 158 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLRC2P26717 231 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PON1P27169 355 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPA1P27694 616 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSMA5P28066 241 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBL1P28749 1068 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TNFRSF8P28908 595 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDC25CP30307 473 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GDI1P31150 447 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HOXD3P31249 432 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC6A4P31645 630 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 STIP1P31948 543 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 OTX2P32243 289 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDAP32320 146 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MC5RP33032 325 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HTR7P34969 479 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCGF2P35227 344 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RDXP35241 583 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 THBS4P35443 961 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DEKP35659 375 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOX6P35712 828 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PBX1P40424 430 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PBX3P40426 434 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 USP8P40818 1118 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRKCIP41743 596 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SKIV2L2P42285 1042 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPS15P42566 896 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FRKP42685 505 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RABIFP47224 123 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALDH1A3P47895 512 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FASLGP48023 281 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTNR1AP48039 350 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCLCP48506 637 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT6CP48668 564 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PITPNBP48739 271 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CENPAP49450 140 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLK3P49761 638 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 VEGFCP49767 419 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DIO1P49895 249 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CAMPP49913 170 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GNAQP50148 359 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ETV1P50549 477 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLCNKBP51801 687 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF75DP51815 510 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GALCP54803 685 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NME5P56597 212 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FOXL2P58012 376 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TIRAPP58753 221 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HILS1P60008 231 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRTAP10-6P60371 365 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HAND2P61296 217 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRA2BP62995 288 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIRPAP78324 504 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms