RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 DEFB128Q7Z7B8 93 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 DDX53Q86TM3 631 aaKnown RBP14.7□□□□□ -0.06
NUP54-217ENST00000514987 RETREG3Q86VR2 466 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 CPNE9Q8IYJ1 553 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 AHI1Q8N157 1196 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 CPXM2Q8N436 756 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 WBP2Q969T9 261 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 EME1Q96AY2 570 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 KCNA7Q96RP8 456 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 SLC30A3Q99726 388 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 SPG21Q9NZD8 308 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 GALPQ9UBC7 116 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 SUN2Q9UH99 717 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 BTRCQ9Y297 605 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 INSL5Q9Y5Q6 135 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 AP4B1Q9Y6B7 739 aa14.7□□□□□ -0.06
NUP54-217ENST00000514987 SMIM31A0A1B0GVY4 71 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 IFRD1O00458 451 aaPredicted RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 E2F3O00716 465 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 HNRNPRO43390 633 aaKnown RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 TNFAIP8O95379 198 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 ITGALP20701 1170 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 CAPN3P20807 821 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 SH3BGRP55822 239 aaPredicted RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 RALGDSQ12967 914 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 RCAN2Q14206 197 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 GPR33Q49SQ1 333 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 VPS26BQ4G0F5 336 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 C6orf10Q5SRN2 563 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 FBXL19Q6PCT2 694 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 LYSMD3Q7Z3D4 306 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 SNX20Q7Z614 316 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 TMEM150AQ86TG1 271 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 PIH1D2Q8WWB5 315 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 LRRC58Q96CX6 371 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 EPB41L1Q9H4G0 881 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 PAK6Q9NQU5 681 aaPredicted RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 C8orf4Q9NR00 106 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 MRPL17Q9NRX2 175 aaKnown RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 ACTR3BQ9P1U1 418 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 LEF1Q9UJU2 399 aaPredicted RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 OGDHLQ9ULD0 1010 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 FCF1Q9Y324 198 aaKnown RBP14.69□□□□□ -0.06
NUP54-217ENST00000514987 DNAH12Q6ZR08 3092 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 KIAA1671Q9BY89 1806 aa14.69□□□□□ -0.06
NUP54-217ENST00000514987 KANSL1LA0AUZ9 987 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 FAM234BA2RU67 622 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 HTRA2O43464 458 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 GREM1O60565 184 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 EEDO75530 441 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 SLC22A3O75751 556 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 MSH3P20585 1137 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 DGKAP23743 735 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 HK3P52790 923 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ATXN3P54252 364 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 ADRM1Q16186 407 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 MPPE1Q53F39 396 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 LCN8Q6JVE9 175 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 SLC15A3Q8IY34 581 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 MYO1HQ8N1T3 1032 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 CBARPQ8N350 705 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 PACRGLQ8N7B6 248 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ANKFN1Q8N957 763 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 PDPRQ8NCN5 879 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ZNF597Q96LX8 424 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 SMIM14Q96QK8 99 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 OSBPL11Q9BXB4 747 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ATP13A3Q9H7F0 1226 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ZFYVE1Q9HBF4 777 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 KIAA1522Q9P206 1035 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 EIF2B4Q9UI10 523 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 TIMM22Q9Y584 194 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 PTGDR2Q9Y5Y4 395 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 CPQQ9Y646 472 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ABHD14A-ACY1A0A1B0GW23 586 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 NCF1BA6NI72 391 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 NCF1CA8MVU1 366 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 NME4O00746 187 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 IGSF6O95976 241 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 GLUD1P00367 558 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 OTCP00480 354 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 TRBC1P01850 177 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 PABPC4LP0CB38 370 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 BMP2P12643 396 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 NCF1P14598 390 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 ZNF26P17031 533 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 PFKLP17858 780 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 IL10P22301 178 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 AGTR2P50052 363 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 POLR2JP52435 117 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 SMU1Q2TAY7 513 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 AASDHQ4L235 1098 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 ATP6AP1LQ52LC2 224 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ATXN7L2Q5T6C5 722 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 GRAMD4Q6IC98 578 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 SLC39A5Q6ZMH5 540 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 HTR3DQ70Z44 454 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 GALNT13Q8IUC8 556 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 CMTR2Q8IYT2 770 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 ARL14EPQ8N8R7 260 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms