RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 IWS1Q96ST2 819 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 SMC4Q9NTJ3 1288 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 ACAD8Q9UKU7 415 aa3.51□□□□□ -1.85
VPS50-219ENST00000495039 LSM4Q9Y4Z0 139 aaKnown RBP3.51□□□□□ -1.85
VPS50-219ENST00000495039 USP17L23D6RBM5 183 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 EIF3DO15371 548 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS50-219ENST00000495039 SEC14L5O43304 696 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 TMEM63AO94886 807 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 SEC31AO94979 1220 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 TBX18O95935 607 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 SPARCP09486 303 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 HSPA1AP0DMV8 641 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 HSPA1BP0DMV9 641 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 CSF2RAP15509 400 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 NR2C2P49116 596 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 RARSP54136 660 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 CSNK2A1P68400 391 aaPredicted RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 DCTN2Q13561 401 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 FRG2Q64ET8 278 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 RAD9BQ6WBX8 426 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 PLEKHM3Q6ZWE6 761 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 GSTA5Q7RTV2 222 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 CPLX4Q7Z7G2 160 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 DHX40Q8IX18 779 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 BMPERQ8N8U9 685 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 CSNK2A3Q8NEV1 391 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 TDRD7Q8NHU6 1098 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 HUS1BQ8NHY5 278 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 THAP6Q8TBB0 222 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 ETNPPLQ8TBG4 499 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 KCNG4Q8TDN1 519 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 SENP5Q96HI0 755 aaPredicted RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 GLIS2Q9BZE0 524 aaPredicted RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 RANBP17Q9H2T7 1088 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 OLA1Q9NTK5 396 aaKnown RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 PRR34Q9NV39 138 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 MARCH4Q9P2E8 410 aaPredicted RBP3.5□□□□□ -1.85
VPS50-219ENST00000495039 AASSQ9UDR5 926 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 HAO1Q9UJM8 370 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 ERVK-11Q9UQG0 969 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 JRKLQ9Y4A0 524 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 SCINQ9Y6U3 715 aa3.5□□□□□ -1.85
VPS50-219ENST00000495039 UTYO14607 1347 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 EIF3CLB5ME19 914 aaKnown RBP3.49□□□□□ -1.85
VPS50-219ENST00000495039 TAF4O00268 1085 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 LDLRAD4O15165 306 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 SEC14L2O76054 403 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 DNAH10OSP0CZ25 163 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 MAN1A1P33908 653 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 SHMT1P34896 483 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 RPL7AP62424 266 aaKnown RBP3.49□□□□□ -1.85
VPS50-219ENST00000495039 RIGQ13278 110 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 CCNG2Q16589 344 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 CDC73Q6P1J9 531 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 KRTAP5-5Q701N2 237 aaPredicted RBP3.49□□□□□ -1.85
VPS50-219ENST00000495039 ADSSL1Q8N142 457 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 OR5R1Q8NH85 324 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 SMARCE1Q969G3 411 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 SKA1Q96BD8 255 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 ORAI1Q96D31 301 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 SYT11Q9BT88 431 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 BRF2Q9HAW0 419 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 ORC3Q9UBD5 711 aaPredicted RBP3.49□□□□□ -1.85
VPS50-219ENST00000495039 DISP3Q9P2K9 1392 aa3.49□□□□□ -1.85
VPS50-219ENST00000495039 A0A1W2PPI3 338 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 NPIPB15A6NHN6 443 aaPredicted RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 A6NL46 340 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 A8MU10 97 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 SNAP23O00161 211 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 SPINT2O43291 252 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 PDE9AO76083 593 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 EGFP01133 1207 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 TSHBP01222 138 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 NR3C1P04150 777 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 HOXB5P09067 269 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 CEACAM1P13688 526 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 TYMPP19971 482 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 CDAP32320 146 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 ARCN1P48444 511 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 TAS2R38P59533 333 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 TMEM115Q12893 351 aaPredicted RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 KRT32Q14532 448 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 KIR2DS3Q14952 304 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 TBCEQ15813 527 aaPredicted RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 HAUS3Q68CZ6 603 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 ZNF613Q6PF04 617 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 TMTC3Q6ZXV5 915 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 GPR180Q86V85 440 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 OR2T6Q8NHC8 308 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 GTF3C6Q969F1 213 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 PABPC5Q96DU9 382 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 C18orf12Q96KH6 178 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 NEUROD6Q96NK8 337 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 ZNF300Q96RE9 604 aaPredicted RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 PIP5K1AQ99755 562 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 RAD21L1Q9H4I0 556 aa3.48□□□□□ -1.85
VPS50-219ENST00000495039 INTS6Q9UL03 887 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 EXOGQ9Y2C4 368 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 AAR2Q9Y312 384 aaKnown RBP3.48□□□□□ -1.85
VPS50-219ENST00000495039 RUSC2Q8N2Y8 1516 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms