RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NEK5Q6P3R8 708 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 PRR23CQ6ZRP0 262 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 CHSY3Q70JA7 882 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 PCED1BQ96HM7 432 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 DNAJC1Q96KC8 554 aaKnown RBP16.31■□□□□ 0.2
COL7A1-210ENST00000487017 TTPALQ9BTX7 342 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 RACGAP1Q9H0H5 632 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 SOHLH2Q9NX45 425 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 CCL22O00626 93 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 INHBEP58166 350 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 SLC9B1Q4ZJI4 515 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 MOB2Q70IA6 237 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 CSGALNACT1Q8TDX6 532 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 CXorf40BQ96DE9 158 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 SLC9A7Q96T83 725 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 TRNAU1APQ9NX07 287 aaKnown RBP16.31■□□□□ 0.2
COL7A1-210ENST00000487017 ING3Q9NXR8 418 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 WRAP73Q9P2S5 460 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-210ENST00000487017 SUCOQ9UBS9 1254 aaKnown RBP16.31■□□□□ 0.2
COL7A1-210ENST00000487017 C1RP00736 705 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF24P17028 368 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 PBX3P40426 434 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 HSPA7P48741 367 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 ELP6Q0PNE2 266 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 HTRA1Q92743 480 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 HMCESQ96FZ2 354 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 NUSAP1Q9BXS6 441 aaKnown RBP16.31■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF780BQ9Y6R6 833 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 TNFRSF11BO00300 401 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 CASKO14936 926 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 IL1BP01584 269 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ASGR1P07306 291 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 CTSEP14091 401 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 NDUFV1P49821 464 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 DAOAP59103 153 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 BNC1Q01954 994 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SH3PXD2AQ5TCZ1 1133 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 AGMOQ6ZNB7 445 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 FERD3LQ96RJ6 166 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ACBD6Q9BR61 282 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 FBXL21Q9UKT6 434 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 CCDC162PA2VCL2 907 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 TP73O15350 636 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ACSL4O60488 711 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 FGBP02675 491 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 CORO1AP31146 461 aaKnown RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF317Q96PQ6 595 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 BTN3A3O00478 584 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 NCK1P16333 377 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 OR1D2P34982 312 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 CLCNKBP51801 687 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 FBXO48Q5FWF7 155 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 LDLRAP1Q5SW96 308 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 GCNT6Q5T4J0 391 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 TRIT1Q9H3H1 467 aaKnown RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ELL3Q9HB65 397 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 MIOSQ9NXC5 875 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SLC7A4O43246 635 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 OR10H2O60403 315 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 PLOD3O60568 738 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 OR4F21O95013 312 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SULT2A1Q06520 285 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 FAM92BQ6ZTR7 304 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 DAW1Q8N136 415 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 DCBLD1Q8N8Z6 715 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF516Q92618 1163 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 NODALQ96S42 347 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SLC7A8Q9UHI5 535 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SNX10Q9Y5X0 201 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 KHDRBS3O75525 346 aaKnown RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 TAS2R39P59534 338 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 KIAA0930Q6ICG6 404 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 TMPRSS11BQ86T26 416 aa16.3■□□□□ 0.2
COL7A1-210ENST00000487017 HECAQ9UBI9 543 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-210ENST00000487017 SLIT2O94813 1529 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SAGE2PA6NJ88 616 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SLC1A2P43004 574 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 LILRA4P59901 499 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CNPY1Q3B7I2 92 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SLC10A6Q3KNW5 377 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 KCTD8Q6ZWB6 473 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 P2RY8Q86VZ1 359 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 RGL4Q8IZJ4 473 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SCAIQ8N9R8 606 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 VANGL1Q8TAA9 524 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 MAT2BQ9NZL9 334 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 OR10H1Q9Y4A9 318 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 GRM6O15303 877 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ATXN1P54253 815 aaKnown RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 HNRNPDQ14103 355 aaKnown RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 RFTN2Q52LD8 501 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CCDC80Q76M96 950 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 C17orf64Q86WR6 236 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ATAD1Q8NBU5 361 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 C1GALT1C1Q96EU7 318 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 C3orf14Q9HBI5 128 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SEMA3GQ9NS98 782 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 COMMD9Q9P000 198 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 PDE10AQ9Y233 779 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms