RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NAT8LQ8N9F0 302 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 PPHLN1Q8NEY8 458 aaKnown RBP15.67■□□□□ 0.1
UPF3A-208ENST00000484246 GDAP1Q8TB36 358 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 ZDHHC1Q8WTX9 485 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 LINC00615Q96LM1 132 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-208ENST00000484246 KIFC1Q9BW19 673 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 DPEP2Q9H4A9 486 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 SUDS3Q9H7L9 328 aaPredicted RBP15.67■□□□□ 0.1
UPF3A-208ENST00000484246 XAB2Q9HCS7 855 aaKnown RBP15.67■□□□□ 0.1
UPF3A-208ENST00000484246 TREX1Q9NSU2 369 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 CRLS1Q9UJA2 301 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 PLEKHM1Q9Y4G2 1056 aa15.67■□□□□ 0.1
UPF3A-208ENST00000484246 CCL22O00626 93 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 SGTAO43765 313 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 OPA1O60313 960 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 MYF5P13349 255 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 SLC2A4P14672 509 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 ZNF7P17097 686 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 ACRV1P26436 265 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 FASLGP48023 281 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CTSCP53634 463 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 TMPRSS15P98073 1019 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 B4GALNT1Q00973 533 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 INSM1Q01101 510 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 ITIH4Q14624 930 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 PPP1R7Q15435 360 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CCDC38Q502W7 563 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CDCP2Q5VXM1 449 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CRTC3Q6UUV7 619 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 WASH2PQ6VEQ5 465 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CHST15Q7LFX5 561 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 ZNF572Q7Z3I7 529 aaPredicted RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CAND1Q86VP6 1230 aaKnown RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 TRAPPC5Q8IUR0 188 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 NAGSQ8N159 534 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 SFRP1Q8N474 314 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 COPS8Q99627 209 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 WASH6PQ9NQA3 447 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 ZDHHC3Q9NYG2 299 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.66■□□□□ 0.1
UPF3A-208ENST00000484246 SIRPGQ9P1W8 387 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 GULP1Q9UBP9 304 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 MSRB2Q9Y3D2 182 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 PRKAB1Q9Y478 270 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 SPTBN2O15020 2390 aa15.66■□□□□ 0.1
UPF3A-208ENST00000484246 CCDC162PA2VCL2 907 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 OR5K4A6NMS3 321 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 CFAP99D6REC4 459 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 RALBP11234 206 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 F3P13726 295 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 MSH3P20585 1137 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 IVDP26440 423 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 AKT1P31749 480 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SESN2P58004 480 aaPredicted RBP15.65■□□□□ 0.1
UPF3A-208ENST00000484246 DHX34Q14147 1143 aaKnown RBP15.65■□□□□ 0.1
UPF3A-208ENST00000484246 PERM1Q5SV97 790 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 RNASEH2BQ5TBB1 312 aaKnown RBP15.65■□□□□ 0.1
UPF3A-208ENST00000484246 AGAP9Q5VTM2 703 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 PACS1Q6VY07 963 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 CERS6Q6ZMG9 384 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 CCNI2Q6ZMN8 369 aaPredicted RBP15.65■□□□□ 0.1
UPF3A-208ENST00000484246 HOOK3Q86VS8 718 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 PPIL6Q8IXY8 311 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 PIANPQ8IYJ0 282 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 DCBLD1Q8N8Z6 715 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 AVL9Q8NBF6 648 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 ZNF778Q96MU6 729 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 TTC25Q96NG3 672 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SERPINB12Q96P63 405 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SCNM1Q9BWG6 230 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 TBC1D29Q9UFV1 150 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SLC23A2Q9UGH3 650 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SLC2A6Q9UGQ3 507 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 SOX13Q9UN79 622 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 KCNK6Q9Y257 313 aa15.65■□□□□ 0.1
UPF3A-208ENST00000484246 KIR2DS5A0A0G2JLQ3 304 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 A0A0G2JNG1 304 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 CPED1A4D0V7 1026 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 KIR2DS3K7RE56 304 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 SMAPO00193 183 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 NTN3O00634 580 aaPredicted RBP15.64■□□□□ 0.09
UPF3A-208ENST00000484246 DNALI1O14645 258 aaPredicted RBP15.64■□□□□ 0.09
UPF3A-208ENST00000484246 TCEA3O75764 348 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 TOP3BO95985 862 aaKnown RBP15.64■□□□□ 0.09
UPF3A-208ENST00000484246 TUBB4AP04350 444 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 GSTM1P09488 218 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 VCLP18206 1134 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 MGAT1P26572 445 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 PRLHRP49683 370 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 DR1Q01658 176 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 GSTM4Q03013 218 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 KIR2DS5Q14953 304 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 DBN1Q16643 649 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 CLPPQ16740 277 aaPredicted RBP15.64■□□□□ 0.09
UPF3A-208ENST00000484246 INSCQ1MX18 579 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 HES3Q5TGS1 186 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 LYPLAL1Q5VWZ2 237 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 IYDQ6PHW0 289 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 PCGF5Q86SE9 256 aa15.64■□□□□ 0.09
UPF3A-208ENST00000484246 SERPINA9Q86WD7 417 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms