RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 GPN2Q9H9Y4 310 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-208ENST00000470076 SCHIP1Q9P0W5 487 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-208ENST00000470076 SLC23A2Q9UGH3 650 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 INTUQ9ULD6 942 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 PRR19A6NJB7 356 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 PDZK1P1A8MUH7 402 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 TERTO14746 1132 aaKnown RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 TOX3O15405 576 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 SUV39H1O43463 412 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 PMPCBO75439 489 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 STK17BO94768 372 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 UBXN7O94888 489 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 CDK14O94921 469 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 PTPN3P26045 913 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 SLC19A1P41440 591 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 NOP2P46087 812 aaKnown RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 ABHD18Q0P651 414 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 TFDP2Q14188 446 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 PRKD1Q15139 912 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 PLA2G4EQ3MJ16 856 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 ABRAXAS1Q6UWZ7 409 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 MFSD7Q6UXD7 560 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 C9orf72Q96LT7 481 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 TRABDQ9H4I3 376 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 APMAPQ9HDC9 416 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 SIDT1Q9NXL6 827 aaKnown RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF624Q9P2J8 865 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-208ENST00000470076 TUBD1Q9UJT1 453 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 DNAJC16Q9Y2G8 782 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 SPO11Q9Y5K1 396 aa17.22■□□□□ 0.35
COL7A1-208ENST00000470076 MTSS1O43312 755 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 SPOPO43791 374 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 MTX2O75431 263 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 TNNT1P13805 278 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 VCLP18206 1134 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 IDSP22304 550 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 HMGCLP35914 325 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 CDKN2BP42772 138 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 CCR10P46092 362 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 GFERP55789 205 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 POLE2P56282 527 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 NFKB2Q00653 900 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 TAZQ16635 292 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 AGAP9Q5VTM2 703 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 WASH2PQ6VEQ5 465 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 B4GALNT4Q76KP1 1039 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 TIPARPQ7Z3E1 657 aaKnown RBP17.21■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF547Q8IVP9 402 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 RBM12BQ8IXT5 1001 aaKnown RBP17.21■□□□□ 0.35
COL7A1-208ENST00000470076 DTX3LQ8TDB6 740 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 TFB1MQ8WVM0 346 aaKnown RBP17.21■□□□□ 0.35
COL7A1-208ENST00000470076 WASH6PQ9NQA3 447 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 POT1Q9NUX5 634 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 UBP1Q9NZI7 540 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 OGFRQ9NZT2 677 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 IL17BQ9UHF5 180 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 FAM153AQ9UHL3 310 aa17.21■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF106Q9H2Y7 1883 aaKnown RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 HECTD1Q9ULT8 2610 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 LOC101059948A0A1B0GTJ6 334 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 LOC285095A0A1B0GVY8 99 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 AURKAO14965 403 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 PSTPIP1O43586 416 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 DLGAP3O95886 979 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 EPOP01588 193 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 TYRP1P17643 537 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 AMD1P17707 334 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 COMTP21964 271 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 TNNT3P45378 269 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 TMEM115Q12893 351 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 KCNAB2Q13303 367 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 GTF2H3Q13889 308 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 MAP7Q14244 749 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 SEPT7Q16181 437 aaKnown RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 ATP13A5Q4VNC0 1218 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 KHDC1Q4VXA5 237 aaKnown RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 ZDHHC20Q5W0Z9 365 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 CNGA4Q8IV77 575 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 ESX1Q8N693 406 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 BRSK1Q8TDC3 778 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 TTC25Q96NG3 672 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 BPIFA1Q9NP55 256 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 HACD3Q9P035 362 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 SAE1Q9UBE0 346 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-208ENST00000470076 TMPRSS11EQ9UL52 423 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 HYOU1Q9Y4L1 999 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 SLC30A1Q9Y6M5 507 aa17.2■□□□□ 0.34
COL7A1-208ENST00000470076 NKX2-8O15522 239 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 CST8O60676 142 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 KCNJ13O60928 360 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 BRAFP15056 766 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 NFKB1P19838 968 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 RPL10P27635 214 aaKnown RBP17.19■□□□□ 0.34
COL7A1-208ENST00000470076 CD68P34810 354 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-208ENST00000470076 WNT3AP56704 352 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 MC1RQ01726 317 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 FOXM1Q08050 763 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 WASHC5Q12768 1159 aa17.19■□□□□ 0.34
COL7A1-208ENST00000470076 SKOR2Q2VWA4 1001 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms