RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 LRRC40Q9H9A6 602 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ETNK1Q9HBU6 452 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 EPB41L5Q9HCM4 733 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ASCL3Q9NQ33 180 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 FEZ2Q9UHY8 353 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 FKBPLQ9UIM3 349 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 PCDHGA8Q9Y5G5 932 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 ACACAQ13085 2346 aa12.56□□□□□ -0.4
PRPF40A-203ENST00000448428 APC2O95996 2303 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 A0A087WV48 116 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 IGHV1OR21-1A0A087WYE8 117 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 CCL22O00626 93 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 ZW10O43264 779 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SRP72O76094 671 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 PRAMEF1O95521 474 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 CPNE6O95741 557 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 IFNB1P01574 187 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 CXCR5P32302 372 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF140P52738 457 aaPredicted RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 CTSCP53634 463 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 ERVPABLB-1P60509 514 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SQSTM1Q13501 440 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 GTF2H3Q13889 308 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 CCNG2Q16589 344 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 TMEM220Q6QAJ8 160 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 IGF2-ASQ6U949 168 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 RAB11FIP2Q7L804 512 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 TRAPPC5Q8IUR0 188 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SLITRK4Q8IW52 837 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 FBXO39Q8N4B4 442 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SNIP1Q8TAD8 396 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC38A3Q99624 504 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 C19orf43Q9BQ61 176 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 NUDT22Q9BRQ3 303 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 TIMM29Q9BSF4 260 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 STRADBQ9C0K7 418 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 FAM96AQ9H5X1 160 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 ASB8Q9H765 288 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SARS2Q9NP81 518 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SMOXQ9NWM0 555 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 PIH1D1Q9NWS0 290 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 KCNK4Q9NYG8 393 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 SCHIP1Q9P0W5 487 aaPredicted RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 DRG1Q9Y295 367 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 DNAJC16Q9Y2G8 782 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 FREM2Q5SZK8 3169 aa12.55□□□□□ -0.4
PRPF40A-203ENST00000448428 KIR2DS5A0A0G2JLQ3 304 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 A0A0G2JNG1 304 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 OR2AG2A6NM03 316 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 OR5K4A6NMS3 321 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 AGAP14A8MT82 685 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 KIR2DS3K7RE56 304 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 AGRPO00253 132 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 PLD2O14939 933 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 CEP104O60308 925 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 POP7O75817 140 aaKnown RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 TNFSF15O95150 251 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 FGGP02679 453 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 HOXB3P14651 431 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC2A4P14672 509 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 XRCC1P18887 633 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 MSH3P20585 1137 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 RPL10P27635 214 aaKnown RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 ITPKBP27987 946 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 RBMS1P29558 406 aaKnown RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 HADHAP40939 763 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 HHEXQ03014 270 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 CFHR1Q03591 330 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 NFATC2Q13469 925 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 KIR2DS5Q14953 304 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 CLPPQ16740 277 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 MAP9Q49MG5 647 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 PHF19Q5T6S3 580 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 DRICH1Q6PGQ1 229 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 ABRAXAS1Q6UWZ7 409 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 MICALCLQ6ZW33 695 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 LINC00523Q86TU6 105 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC9B2Q86UD5 537 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 REXO1L1PQ8IX06 675 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 GLIS1Q8NBF1 620 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 OR52K1Q8NGK4 314 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 SGF29Q96ES7 293 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 DNAJC1Q96KC8 554 aaKnown RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 ZNF624Q9P2J8 865 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 CPNE7Q9UBL6 633 aa12.54□□□□□ -0.4
PRPF40A-203ENST00000448428 IGHV5-10-1A0A0J9YXX1 117 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 ERI2A8K979 691 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 CDRT15L2A8MXV6 281 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 KCNJ13O60928 360 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 SUN1O94901 812 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 ZSCAN5DPP0CG00 497 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 HGFP14210 728 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 BRAFP15056 766 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 IDSP22304 550 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 RPL22P35268 128 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 FDFT1P37268 417 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 SLC19A1P41440 591 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 GRIA1P42261 906 aa12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 CDKN1CP49918 316 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-203ENST00000448428 DRG2P55039 364 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms