RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DDI1Q8WTU0 396 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NCSTNQ92542 709 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 TMBIM1Q969X1 311 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NSMCE3Q96MG7 304 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 TSSK3Q96PN8 268 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CCDC28BQ9BUN5 200 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NANOGQ9H9S0 305 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ZC4H2Q9NQZ6 224 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CATSPERZQ9NTU4 200 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 RRN3P2A6NIE6 340 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 A6NL46 340 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 hCG_2039718K7EN88 272 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 FXYD1O00168 92 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 DLGAP1O14490 977 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 MTX2O75431 263 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 F9P00740 461 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ODC1P11926 461 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CD1DP15813 335 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 IL5RAQ01344 420 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 DUSP4Q13115 394 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NAB1Q13506 487 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 FAM171A1Q5VUB5 890 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NEK10Q6ZWH5 1172 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CAMK1DQ8IU85 385 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 OR4L1Q8NH43 312 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 DLG3Q92796 817 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ZNF597Q96LX8 424 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 BEGAINQ9BUH8 593 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 BOCQ9BWV1 1114 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 RIBC2Q9H4K1 309 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ZNF385DQ9H6B1 395 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CARS2Q9HA77 564 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 RCOR3Q9P2K3 495 aaPredicted RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 VPS51Q9UID3 782 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 MOSPD1Q9UJG1 213 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ANAPC2Q9UJX6 822 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ARIH1Q9Y4X5 557 aaPredicted RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 SLC30A1Q9Y6M5 507 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 ASCC3Q8N3C0 2202 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 A0A087X1B8 175 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 SLCO1B7G3V0H7 640 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 H0Y858 1186 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 K7ERQ8 282 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CCNCP24863 283 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 PIGAP37287 484 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 MTHFRP42898 656 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 BMXP51813 675 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 MAPRE2Q15555 327 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 TGFBIQ15582 683 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 KYAT1Q16773 422 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 MS4A13Q5J8X5 152 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 INTS6LQ5JSJ4 861 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 Q6ZPB1 254 aaPredicted RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 R3HCC1LQ7Z5L2 792 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 ADGRG5Q8IZF4 528 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 CACTIN-AS1Q8N1I8 211 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 FLCNQ8NFG4 579 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 TFAP2CQ92754 450 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 FAM162AQ96A26 154 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NSMCE2Q96MF7 247 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 BARD1Q99728 777 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 KATNBL1Q9H079 304 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 KLHL25Q9H0H3 589 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 IKZF5Q9H5V7 419 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 NSUN3Q9H649 340 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 TREX1Q9NSU2 369 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 DDX28Q9NUL7 540 aaKnown RBP8.57□□□□□ -1.04
USP40-203ENST00000427112 MARCH2Q9P0N8 246 aa8.57□□□□□ -1.04
USP40-203ENST00000427112 A0A087WXM4 84 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 MTSS1O43312 755 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 H2AFYO75367 372 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 INMTO95050 263 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 NTRK1P04629 796 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 MTHFD2P13995 350 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ELNP15502 786 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 PSMB9P28065 219 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 HERVK_113P63132 956 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 CDK18Q07002 472 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 VAC14Q08AM6 782 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 TAF1CQ15572 869 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 RFTN2Q52LD8 501 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 ANKS6Q68DC2 871 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 PRSS55Q6UWB4 352 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 CYS1Q717R9 158 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 LYSMD3Q7Z3D4 306 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 APLFQ8IW19 511 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 CPSF7Q8N684 471 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 RTL3Q8N8U3 475 aaKnown RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 Q8N9G6 341 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 C7orf57Q8NEG2 295 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 ITFG1Q8TB96 612 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 HTRA1Q92743 480 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 GLMNQ92990 594 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 HERC2P3Q9BVR0 1158 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 NPLQ9BXD5 320 aaPredicted RBP8.56□□□□□ -1.04
USP40-203ENST00000427112 ERVK-6Q9BXR3 956 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 OSBPL6Q9BZF3 934 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 MEAF6Q9HAF1 191 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 TMEM181Q9P2C4 612 aa8.56□□□□□ -1.04
USP40-203ENST00000427112 SUCOQ9UBS9 1254 aaKnown RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms