RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KLHL32Q96NJ5 620 aa11.03□□□□□ -0.64
TCOF1-203ENST00000394269 VPS9D1Q9Y2B5 631 aa11.03□□□□□ -0.64
TCOF1-203ENST00000394269 SYCE1LA8MT33 242 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 CCNT2O60583 730 aaKnown RBP11.02□□□□□ -0.64
TCOF1-203ENST00000394269 EFCAB14O75071 495 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 OR4F21O95013 312 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 NFATC2Q13469 925 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 PTK2BQ14289 1009 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 MYLK3Q32MK0 819 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 C1orf53Q5VUE5 145 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 C16orf89Q6UX73 402 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 CYP2R1Q6VVX0 501 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 IFNEQ86WN2 208 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 CACUL1Q86Y37 369 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.02□□□□□ -0.642e-7■■■■■ 102.3
TCOF1-203ENST00000394269 ENDOVQ8N8Q3 282 aaKnown RBP11.02□□□□□ -0.64
TCOF1-203ENST00000394269 GPR26Q8NDV2 337 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 LKAAEAR1Q8TD35 194 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 SCAMP4Q969E2 229 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 MYCBPQ99417 103 aaPredicted RBP11.02□□□□□ -0.64
TCOF1-203ENST00000394269 CCDC28BQ9BUN5 200 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 DERL2Q9GZP9 239 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 PCDHAC1Q9H158 963 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 PIF1Q9H611 641 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 NSUN3Q9H649 340 aaKnown RBP11.02□□□□□ -0.64
TCOF1-203ENST00000394269 NOL11Q9H8H0 719 aaKnown RBP11.02□□□□□ -0.64
TCOF1-203ENST00000394269 MAGEE1Q9HCI5 957 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 STOML2Q9UJZ1 356 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 ANGPTL2Q9UKU9 493 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 ANGPTL3Q9Y5C1 460 aa11.02□□□□□ -0.64
TCOF1-203ENST00000394269 PLXNA3P51805 1871 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 CUL9Q8IWT3 2517 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 KRT87PA6NCN2 255 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 FFAR3O14843 346 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 GRM6O15303 877 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 GPR42O15529 346 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 PTPN2P17706 415 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 HSPA7P48741 367 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 HK3P52790 923 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 DIO3P55073 304 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 SLC7A9P82251 487 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 FPGSQ05932 587 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 TRIP10Q15642 601 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 GRAMD1BQ3KR37 738 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 MBOAT1Q6ZNC8 495 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 FAR2Q96K12 515 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 SERPINI1Q99574 410 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 LRRC3Q9BY71 257 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 SLC25A13Q9UJS0 675 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 AK5Q9Y6K8 562 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 TXNDC9O14530 226 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 KIAA0355O15063 1070 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 OLFM2O95897 454 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 BMPR1AP36894 532 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 SLC26A3P40879 764 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 ATP6V0D1P61421 351 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 ARHGEF7Q14155 803 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 TGFBIQ15582 683 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 ARHGAP15Q53QZ3 475 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 IZUMO2Q6UXV1 221 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF783Q6ZMS7 281 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 PIAS4Q8N2W9 510 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-203ENST00000394269 MTFMTQ96DP5 389 aaKnown RBP11.02□□□□□ -0.65
TCOF1-203ENST00000394269 RAD9AQ99638 391 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 SUV39H2Q9H5I1 410 aa11.02□□□□□ -0.65
TCOF1-203ENST00000394269 MRPS23Q9Y3D9 190 aaKnown RBP11.02□□□□□ -0.65
TCOF1-203ENST00000394269 FZD6O60353 706 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF821O75541 412 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 BAIAP3O94812 1187 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 ESR1P03372 595 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 S100BP04271 92 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 HSPA8P11142 646 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 HOXB8P17481 243 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 XPAP23025 273 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 VIPR2P41587 438 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 DPP6P42658 865 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 MS4A2Q01362 244 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 LCP2Q13094 533 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 CCNIQ14094 377 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 BOP1Q14137 746 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 MAP7D1Q3KQU3 841 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF648Q5T619 568 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 CRTC1Q6UUV9 634 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 BHLHE22Q8NFJ8 381 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 METTL6Q8TCB7 284 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 GMPR2Q9P2T1 348 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 ZNHIT2Q9UHR6 403 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 OAS3Q9Y6K5 1087 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 NCOR1O75376 2440 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 TTC34A8MYJ7 566 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 PABPC1P11940 636 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 CEACAM7Q14002 265 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 PLA2G4EQ3MJ16 856 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 C22orf39Q6P5X5 142 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 GALNT7Q86SF2 657 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 SYVN1Q86TM6 617 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 NUDT8Q8WV74 236 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 IRF7Q92985 503 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 TRMOQ9BU70 441 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms