RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 CRISPLD1Q9H336 500 aa25.07■■□□□ 1.6
C9orf40-201ENST00000376854 SUN2Q9UH99 717 aa25.07■■□□□ 1.6
C9orf40-201ENST00000376854 NIPSNAP2O75323 286 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 TSPAN12O95859 305 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 EEFSECP57772 596 aaKnown RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 ERVK-8P63133 956 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 TIGD2Q4W5G0 525 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 PDCD4Q53EL6 469 aaKnown RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 PIANPQ8IYJ0 282 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 FBXL20Q96IG2 436 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 PFDN4Q9NQP4 134 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 TRMT6Q9UJA5 497 aaKnown RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 ANKRD36A6QL64 1941 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 FRMPD3Q5JV73 1810 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 OR1I1O60431 355 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 C1RP00736 705 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 PKMP14618 531 aaKnown RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 HK3P52790 923 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 DCTN2Q13561 401 aaKnown RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 AASDHQ4L235 1098 aaPredicted RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 NANOGP8Q6NSW7 305 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 PSAPL1Q6NUJ1 521 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 GPRIN3Q6ZVF9 776 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 NANOGQ9H9S0 305 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 RIC8BQ9NVN3 520 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 VPS9D1Q9Y2B5 631 aa25.06■■□□□ 1.6
C9orf40-201ENST00000376854 ZFP37Q9Y6Q3 630 aaPredicted RBP25.06■■□□□ 1.6
C9orf40-201ENST00000376854 OR6C75A6NL08 312 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 CLOCKO15516 846 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 CLIC3O95833 236 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 KPNA1P52294 538 aaPredicted RBP25.05■■□□□ 1.6
C9orf40-201ENST00000376854 GPSM1Q86YR5 675 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 TBC1D21Q8IYX1 336 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 LPCAT1Q8NF37 534 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 EEF1AKMT1Q8WVE0 214 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 LINGO1Q96FE5 620 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 CD320Q9NPF0 282 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 SCUBE2Q9NQ36 999 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 INTS7Q9NVH2 962 aaKnown RBP25.05■■□□□ 1.6
C9orf40-201ENST00000376854 CD274Q9NZQ7 290 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 EIF2B4Q9UI10 523 aaKnown RBP25.05■■□□□ 1.6
C9orf40-201ENST00000376854 ASB1Q9Y576 335 aa25.05■■□□□ 1.6
C9orf40-201ENST00000376854 KANSL1LA0AUZ9 987 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 PRLP01236 227 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 UMPSP11172 480 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 CST5P28325 142 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 OXCT1P55809 520 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 IL2P60568 153 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 MRPL58Q14197 206 aaKnown RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 ZBED5Q49AG3 693 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 CLVS1Q8IUQ0 354 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 DCBLD1Q8N8Z6 715 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 FNDC5Q8NAU1 212 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 PAPD5Q8NDF8 572 aaKnown RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 PHF12Q96QT6 1004 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 TDRD1Q9BXT4 1180 aaKnown RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 PREBQ9HCU5 417 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 ZIM2Q9NZV7 527 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 USP22Q9UPT9 525 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 FNDC3AQ9Y2H6 1198 aaKnown RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 ARIH1Q9Y4X5 557 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 FADS3Q9Y5Q0 445 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 HEMK1Q9Y5R4 338 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 FAM234BA2RU67 622 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 MTMR11A4FU01 709 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 OR4F21O95013 312 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 LPOP22079 712 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 IL12AP29459 219 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 ACLYP53396 1101 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 C5orf22Q49AR2 442 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 CTSL3PQ5NE16 218 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 C6orf136Q5SQH8 315 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 CDYL2Q8N8U2 506 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 ADAMTS16Q8TE57 1224 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 SMPD3Q9NY59 655 aaPredicted RBP25.04■■□□□ 1.6
C9orf40-201ENST00000376854 FKBPLQ9UIM3 349 aa25.04■■□□□ 1.6
C9orf40-201ENST00000376854 E2F3O00716 465 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 ACSL4O60488 711 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 SYNCRIPO60506 623 aaKnown RBP25.03■■□□□ 1.6
C9orf40-201ENST00000376854 MC4RP32245 332 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 MTA1Q13330 715 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 DHRSXQ8N5I4 330 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 PCSK9Q8NBP7 692 aaKnown RBP25.03■■□□□ 1.6
C9orf40-201ENST00000376854 CD200R1Q8TD46 325 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 GIPC2Q8TF65 315 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 SPATA17Q96L03 361 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 PIF1Q9H611 641 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 RPF2Q9H7B2 306 aaKnown RBP25.03■■□□□ 1.6
C9orf40-201ENST00000376854 RNF186Q9NXI6 227 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 VWA8A3KMH1 1905 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 TRIM64A6NGJ6 449 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 MT-ND1P03886 318 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 CR2P20023 1033 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 RPS9P46781 194 aaKnown RBP25.03■■□□□ 1.6
C9orf40-201ENST00000376854 TTPAP49638 278 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 RNF19BQ6ZMZ0 732 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 OFCC1Q8IZS5 231 aa25.03■■□□□ 1.6
C9orf40-201ENST00000376854 MAGEE2Q8TD90 523 aaPredicted RBP25.03■■□□□ 1.6
C9orf40-201ENST00000376854 BIRC7Q96CA5 298 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms