RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SNX32Q86XE0 403 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 RNF135Q8IUD6 432 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 NRSN1Q8IZ57 195 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TNIP2Q8NFZ5 429 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 OR52K2Q8NGK3 314 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 MAPK15Q8TD08 544 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 CD200R1Q8TD46 325 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PPP2R3CQ969Q6 453 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ZUFSPQ96AP4 578 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PBXIP1Q96AQ6 731 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 VWCEQ96DN2 955 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PHF21BQ96EK2 531 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ASIC4Q96FT7 647 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PPP3R2Q96LZ3 170 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 GPR21Q99679 349 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SH3GL1Q99961 368 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 FAM83CQ9BQN1 747 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SLC29A3Q9BZD2 475 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 OSBPL6Q9BZF3 934 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 BRINP2Q9C0B6 783 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 EPHX3Q9H6B9 360 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 WDR55Q9H6Y2 383 aaPredicted RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ASB8Q9H765 288 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 MID1IP1Q9NPA3 183 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TDP1Q9NUW8 608 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ASIC5Q9NY37 505 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 OBP2AQ9NY56 170 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ZDHHC3Q9NYG2 299 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 CFAP97Q9P2B7 532 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SUN2Q9UH99 717 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SPO11Q9Y5K1 396 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 DNAJC15Q9Y5T4 150 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ANKRD36A6QL64 1941 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 IGLV3-16A0A075B6K0 115 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 C1orf232A0A0U1RR37 186 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 LOC100653049A0A140TA62 436 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 A0A1W2PP18 115 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 CCDC78A2IDD5 438 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 MAGEA13PA6NCF6 341 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 C2orf71A6NGG8 1288 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 AQP12BA6NM10 295 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 A8MUI8 341 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 SUPT3HB4E1H0 165 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 NPIPB8E9PQR5 432 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 H0Y858 1186 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 SLC28A1O00337 649 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 BTN3A1O00481 513 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 AURKAO14965 403 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 ANGPT2O15123 496 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 UGDHO60701 494 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 SUPT3HO75486 399 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 KRT34O76011 436 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PRAMEF1O95521 474 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TSPAN12O95859 305 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PDHA1P08559 390 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 EBLN1P0CF75 366 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PRR35P0CG20 571 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 FCGR1AP12314 374 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 CSF2RAP15509 400 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 MZF1P28698 734 aaPredicted RBP8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 RGRP47804 291 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 ERVK-8P63133 956 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 SLC25A3Q00325 362 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 ECT2LQ008S8 904 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TIAL1Q01085 375 aaKnown RBP eCLIP8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 EMX2Q04743 252 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 FPGSQ05932 587 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 LRP8Q14114 963 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 FLOT2Q14254 428 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 EIF4HQ15056 248 aaKnown RBP8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TGFBIQ15582 683 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PDCD2Q16342 344 aaPredicted RBP8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 GEN1Q17RS7 908 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 ZNF789Q5FWF6 425 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 MTX3Q5HYI7 312 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PITRM1Q5JRX3 1037 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 VWA5B1Q5TIE3 1220 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TPGS1Q6ZTW0 290 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 GPRIN3Q6ZVF9 776 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 C16orf59Q7L2K0 433 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TAS2R42Q7RTR8 314 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 AQP12AQ8IXF9 295 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 NXPE1Q8N323 547 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PHTF2Q8N3S3 785 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PAF1Q8N7H5 531 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PHC3Q8NDX5 983 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 TWIST2Q8WVJ9 160 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 WDR60Q8WVS4 1066 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 ATL1Q8WXF7 558 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 HERVK_113Q902F9 699 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 IRF7Q92985 503 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 PTERQ96BW5 349 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 MYEOVQ96EZ4 313 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 LMLNQ96KR4 655 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 LRGUKQ96M69 825 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 COPS8Q99627 209 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 HGH1Q9BTY7 390 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 NTMT1Q9BV86 223 aa8.62□□□□□ -1.03
SNRNP40-202ENST00000373720 KLHL4Q9C0H6 718 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms