RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ZNF624Q9P2J8 865 aaPredicted RBP13.62□□□□□ -0.23
VPS29-201ENST00000360579 MYO6Q9UM54 1294 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ADGRG1Q9Y653 693 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 CRYBG3Q68DQ2 2970 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ESPL1Q14674 2120 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 C2orf72A6NCS6 295 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 ARGFXA6NJG6 315 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 TCP11X1B4DZS4 312 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 CHUKO15111 745 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 KMOO15229 486 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 MATN3O15232 486 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 KIF1CO43896 1103 aaKnown RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 SLC25A14O95258 325 aaPredicted RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 PRLP01236 227 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 GZMAP12544 262 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 IL1R2P27930 398 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 DCTP40126 519 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 CCL11P51671 97 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 DSC2Q02487 901 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 EIF2S3LQ2VIR3 472 aaKnown RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 TDRD12Q587J7 1177 aaKnown RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 CPZQ66K79 652 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 PWWP2BQ6NUJ5 590 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 JMJD6Q6NYC1 403 aaPredicted RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 KLHL35Q6PF15 583 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 ABRAXAS1Q6UWZ7 409 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 WASH2PQ6VEQ5 465 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 FAM92BQ6ZTR7 304 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 IRF2BP2Q7Z5L9 587 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 LRRTM4Q86VH4 590 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 PRR7Q8TB68 274 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 TEKT4Q8WW24 435 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 MAML1Q92585 1016 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 RSC1A1Q92681 617 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 FATE1Q969F0 183 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 CXorf40BQ96DE9 158 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 SLC41A2Q96JW4 573 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 HS3ST6Q96QI5 342 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 TIMM29Q9BSF4 260 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 ZSCAN5AQ9BUG6 496 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 MLPHQ9BV36 600 aaPredicted RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 SPATA16Q9BXB7 569 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 SLC40A1Q9NP59 571 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 WASH6PQ9NQA3 447 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 RAD18Q9NS91 495 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 FANCLQ9NW38 375 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 RBM22Q9NW64 420 aaKnown RBP eCLIP13.61□□□□□ -0.232e-8■□□□□ 9.5
VPS29-201ENST00000360579 SEMA5BQ9P283 1151 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 LIMA1Q9UHB6 759 aaKnown RBP13.61□□□□□ -0.23
VPS29-201ENST00000360579 TTLL3Q9Y4R7 772 aa13.61□□□□□ -0.23
VPS29-201ENST00000360579 CSMD1Q96PZ7 3565 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 WIPF3A6NGB9 483 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ANKRD66B4E2M5 251 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 CPNE3O75131 537 aaKnown RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 TIAF1O95411 115 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 FTLP02792 175 aaPredicted RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 MYBL1P10243 752 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 RARAP10276 462 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ZNF7P17097 686 aaPredicted RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 VCLP18206 1134 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 LPOP22079 712 aaPredicted RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 IDSP22304 550 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ARL4DP49703 201 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 CHAF1BQ13112 559 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 GPR18Q14330 331 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 SEPT7Q16181 437 aaKnown RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 CCDC122Q5T0U0 273 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 AGAP9Q5VTM2 703 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ZNF787Q6DD87 383 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 CRTC3Q6UUV7 619 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 KMT5CQ86Y97 462 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 TICAM1Q8IUC6 712 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 RHOT1Q8IXI2 618 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS29-201ENST00000360579 PNPLA2Q96AD5 504 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ZNF653Q96CK0 615 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 ADGRE3Q9BY15 652 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 PCDH18Q9HCL0 1135 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 MAP10Q9P2G4 905 aa13.6□□□□□ -0.23
VPS29-201ENST00000360579 FARSAQ9Y285 508 aaKnown RBP13.6□□□□□ -0.23
VPS29-201ENST00000360579 SSU72P8A0A1W2PR75 194 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 VEGFDO43915 354 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 CEACAM4O75871 244 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 CCNCP24863 283 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 HALP42357 657 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 DCDC1P59894 354 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 RPS18P62269 152 aaKnown RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 GALNT2Q10471 571 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 MRPL49Q13405 166 aaKnown RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 PIGHQ14442 188 aaPredicted RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 KRT81Q14533 505 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 IFI16Q16666 785 aaKnown RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 QPCTQ16769 361 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 IZUMO3Q5VZ72 239 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 ADGRG6Q86SQ4 1221 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 TRAM1L1Q8N609 369 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 ARRDC2Q8TBH0 407 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 GLYATL1Q969I3 302 aa13.59□□□□□ -0.23
VPS29-201ENST00000360579 ZNF514Q96K75 400 aaPredicted RBP13.59□□□□□ -0.23
VPS29-201ENST00000360579 CD180Q99467 661 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms