RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PIANPQ8IYJ0 282 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 CLHC1Q8NHS4 586 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 PLGRKTQ9HBL7 147 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 SYTL2Q9HCH5 934 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 FKBPLQ9UIM3 349 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 ZNF225Q9UK10 706 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 TNPO2O14787 897 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 RASAL1O95294 804 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 PAPSS2O95340 614 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 FAM163BP0C2L3 166 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 TPP2P29144 1249 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 POLR2IP36954 125 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 PBX3P40426 434 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 RPS24P62847 133 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 SLC14A2Q15849 920 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 CYBRD1Q53TN4 286 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 AFMIDQ63HM1 303 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 C16orf59Q7L2K0 433 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 PATL1Q86TB9 770 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 GPSM1Q86YR5 675 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 FAM126BQ8IXS8 530 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ZNF513Q8N8E2 541 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 BRSK1Q8TDC3 778 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 FUBP1Q96AE4 644 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 MTFMTQ96DP5 389 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ARMC7Q9H6L4 198 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ZFP14Q9HCL3 533 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ATP13A1Q9HD20 1204 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ABCD2Q9UBJ2 740 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 TRMT6Q9UJA5 497 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 POLR3HQ9Y535 204 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 GMNNO75496 209 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 CELF2O95319 508 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ZBTB11O95625 1053 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 G6PDP11413 515 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 UGT1A1P22309 533 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 UGT1A4P22310 534 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 PRKACGP22612 351 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 UGT1A3P35503 534 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 UGT1A5P35504 534 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 CREB5Q02930 508 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 TNK2Q07912 1038 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 INTS11Q5TA45 600 aaKnown RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 FRA10AC1Q70Z53 315 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 FNDC8Q8TC99 324 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 PKMYT1Q99640 499 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 APOL5Q9BWW9 433 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 ABCG8Q9H221 673 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 TMEM248Q9NWD8 314 aa12.02□□□□□ -0.49
CLIP3-201ENST00000360535 LEF1Q9UJU2 399 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-201ENST00000360535 KANSL1LA0AUZ9 987 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 MOXD2PA6NHM9 499 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 NT5C1B-RDH14C9J2C7 533 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 KERAO60938 352 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 CAPN1P07384 714 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 FGF4P08620 206 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 IRF1P10914 325 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ATP4BP51164 291 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TWF1Q12792 350 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 SERINC3Q13530 473 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ARTNQ5T4W7 220 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ELMSAN1Q6PJG2 1045 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 GPRIN3Q6ZVF9 776 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 MFSD2AQ8NA29 543 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ITFG1Q8TB96 612 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 NCLNQ969V3 563 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 KIAA1191Q96A73 305 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 CCDC138Q96M89 665 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 CINPQ9BW66 212 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 HIPK3Q9H422 1215 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TFB2MQ9H5Q4 396 aaKnown RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 PRDM5Q9NQX1 630 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 LIMD1Q9UGP4 676 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 UTS2RQ9UKP6 389 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 LOC285095A0A1B0GVY8 99 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 FGF1P05230 155 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TCF3P15923 654 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 MATN1P21941 496 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 MC4RP32245 332 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 C21orf59P57076 290 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 CTXN3Q4LDR2 81 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 C6orf136Q5SQH8 315 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ABI1Q8IZP0 508 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 FAM86B1Q8N7N1 296 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TMBIM1Q969X1 311 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 BTN2A3PQ96KV6 586 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 SEZ6LQ9BYH1 1024 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TRMT13Q9NUP7 481 aaKnown RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 TBC1D23Q9NUY8 699 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 GPIP06744 558 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 SLC2A4P14672 509 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 HRH2P25021 359 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 HMOX2P30519 316 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 SHMT2P34897 504 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 GDF5P43026 501 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 LSM3P62310 102 aaKnown RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 PHEXP78562 749 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 LRRC49Q8IUZ0 686 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 MDGA1Q8NFP4 955 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms