RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ETV5P41161 510 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 MLLT3P42568 568 aaPredicted RBP18.12■□□□□ 0.49
CLN3-202ENST00000355477 GDF10P55107 478 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 HHEXQ03014 270 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 NFATC2Q13469 925 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 SQSTM1Q13501 440 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 TAF1AQ15573 450 aaPredicted RBP18.12■□□□□ 0.49
CLN3-202ENST00000355477 ZDHHC20Q5W0Z9 365 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 C11orf96Q7Z7L8 435 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 KLHDC8BQ8IXV7 354 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 RCBTB1Q8NDN9 531 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 GDAP1Q8TB36 358 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 SLC35B2Q8TB61 432 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 KCNE4Q8WWG9 221 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 SLC38A3Q99624 504 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 OSGEPL1Q9H4B0 414 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 SARS2Q9NP81 518 aaKnown RBP18.12■□□□□ 0.49
CLN3-202ENST00000355477 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-202ENST00000355477 TMEM9Q9P0T7 183 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 PISDQ9UG56 409 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 DNAJC16Q9Y2G8 782 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 PIKFYVEQ9Y2I7 2098 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 STX7O15400 261 aaKnown RBP18.11■□□□□ 0.49
CLN3-202ENST00000355477 KLK10O43240 276 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 JMJD7P0C870 316 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 LPOP22079 712 aaPredicted RBP18.11■□□□□ 0.49
CLN3-202ENST00000355477 MPSTP25325 297 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 LIMK2P53671 638 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 CLPPQ16740 277 aaPredicted RBP18.11■□□□□ 0.49
CLN3-202ENST00000355477 INSCQ1MX18 579 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 OR4K2Q8NGD2 314 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 BRSK1Q8TDC3 778 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 CCDC74BQ96LY2 380 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 TBL1YQ9BQ87 522 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 TIMM29Q9BSF4 260 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 TMEM121Q9BTD3 319 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 TSGA10Q9BZW7 698 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 CPNE7Q9UBL6 633 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 SDK2Q58EX2 2172 aa18.11■□□□□ 0.49
CLN3-202ENST00000355477 KIR2DS5A0A0G2JLQ3 304 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 A0A0G2JNG1 304 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 C2orf81A6NN90 581 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 KIR2DS3K7RE56 304 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ARHGAP6O43182 974 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 KRT86O43790 486 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 PPFIA2O75334 1257 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 KIR2DS5Q14953 304 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 PARP6Q2NL67 630 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 GPRC6AQ5T6X5 926 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 KCTD11Q693B1 232 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ARHGEF18Q6ZSZ5 1173 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 SLC9B2Q86UD5 537 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 JAMLQ86YT9 394 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 RASGEF1AQ8N9B8 481 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 OR4D9Q8NGE8 314 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ZNF398Q8TD17 642 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ATG4AQ8WYN0 398 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 TMEM159Q96B96 161 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 CMKLR1Q99788 373 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 DPH1Q9BZG8 443 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ARNT2Q9HBZ2 717 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 ZNF624Q9P2J8 865 aaPredicted RBP18.1■□□□□ 0.49
CLN3-202ENST00000355477 FKBPLQ9UIM3 349 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 SSUH2Q9Y2M2 353 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 PCDHGA7Q9Y5G6 932 aa18.1■□□□□ 0.49
CLN3-202ENST00000355477 KALRNO60229 2985 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 OR5K4A6NMS3 321 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 CCL4P13236 92 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 SLC2A4P14672 509 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 BRAFP15056 766 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 RPL10P27635 214 aaKnown RBP18.09■□□□□ 0.49
CLN3-202ENST00000355477 CTSCP53634 463 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 MAPK10P53779 464 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 UBE2IP63279 158 aaKnown RBP18.09■□□□□ 0.49
CLN3-202ENST00000355477 GPLD1P80108 840 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 XIAPP98170 497 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 SEPT7Q16181 437 aaKnown RBP18.09■□□□□ 0.49
CLN3-202ENST00000355477 LDLRAP1Q5SW96 308 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 TMEM71Q6P5X7 295 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 TRAPPC5Q8IUR0 188 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 LRRC8AQ8IWT6 810 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 TAB3Q8N5C8 712 aaPredicted RBP18.09■□□□□ 0.49
CLN3-202ENST00000355477 DDHD1Q8NEL9 900 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 OR13C4Q8NGS5 318 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 USP7Q93009 1102 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 TTC25Q96NG3 672 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 PPP1R2P1Q96PQ5 205 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 TBC1D10AQ9BXI6 508 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 ATRXP46100 2492 aa18.09■□□□□ 0.49
CLN3-202ENST00000355477 PRAMEF33A0A0G2JMD5 474 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 NVLO15381 856 aaKnown RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 PRAMEF10O60809 474 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 ZNF189O75820 626 aaPredicted RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 PRAMEF1O95521 474 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 THRAP10827 490 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 XRCC1P18887 633 aaPredicted RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 SLC19A1P41440 591 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 DRG2P55039 364 aaKnown RBP18.08■□□□□ 0.48
CLN3-202ENST00000355477 CLN3Q13286 438 aa18.08■□□□□ 0.48
CLN3-202ENST00000355477 ITGA9Q13797 1035 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms