RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 LGALS13Q9UHV8 139 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 EIF2B4Q9UI10 523 aaKnown RBP14.77□□□□□ -0.05
COL17A1-201ENST00000353479 FAM58BPP0C7Q3 252 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 ZDHHC24Q6UX98 284 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 NAPRTQ6XQN6 538 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 PLEKHM3Q6ZWE6 761 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 FAM129CQ86XR2 697 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 ENOPH1Q9UHY7 261 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 MYH6P13533 1939 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 ZBTB22O15209 634 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 PLIN3O60664 434 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 GJB5O95377 273 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 CCR3P51677 355 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 PAFAH1B3Q15102 231 aaKnown RBP14.77□□□□□ -0.05
COL17A1-201ENST00000353479 LY6G5CQ5SRR4 150 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 SLC9A4Q6AI14 798 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 SPATA19Q7Z5L4 167 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 GLMNQ92990 594 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 OR6A2O95222 327 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 F7P08709 466 aaPredicted RBP14.76□□□□□ -0.05
COL17A1-201ENST00000353479 CDH3P22223 829 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 CMPK1P30085 196 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 LCP2Q13094 533 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 CHIT1Q13231 466 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 QPCTQ16769 361 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 VWA5B1Q5TIE3 1220 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 TMEM130Q8N3G9 435 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 NRF1Q16656 503 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.76□□□□□ -0.05
COL17A1-201ENST00000353479 ARHGAP36Q6ZRI8 547 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 DHDDSQ86SQ9 333 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 DPP10Q8N608 796 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 SIPA1Q96FS4 1042 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 HBEGFQ99075 208 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 IL12RB2Q99665 862 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 SPATA5L1Q9BVQ7 753 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 ZNF132P52740 706 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 C1DQ13901 141 aaKnown RBP14.76□□□□□ -0.05
COL17A1-201ENST00000353479 MYLK3Q32MK0 819 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 C1orf220Q5T0J3 134 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 TRIM40Q6P9F5 258 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 MRPL48Q96GC5 212 aaKnown RBP14.76□□□□□ -0.05
COL17A1-201ENST00000353479 C12orf66Q96MD2 445 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 PITPNM1O00562 1244 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 RGS5O15539 181 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 MTX2O75431 263 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 TGDSO95455 350 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 PLEKHG4Q58EX7 1191 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 SULT1C3Q6IMI6 304 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 NET1Q7Z628 596 aaPredicted RBP14.76□□□□□ -0.05
COL17A1-201ENST00000353479 C14orf80Q86SX3 495 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 TDRPQ86YL5 185 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 DHRSXQ8N5I4 330 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 TMEM109Q9BVC6 243 aa14.76□□□□□ -0.05
COL17A1-201ENST00000353479 RHPN2P1A8MT19 583 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 KDELR3O43731 214 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 KCNJ2P63252 427 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 ELF3P78545 371 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 MED27Q6P2C8 311 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 GPRIN1Q7Z2K8 1008 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 CMTR2Q8IYT2 770 aaKnown RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 UNC5BQ8IZJ1 945 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 AADATQ8N5Z0 425 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 TMEM248Q9NWD8 314 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 GPN3Q9UHW5 284 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 OR4F21O95013 312 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 C8GP07360 202 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 PAICSP22234 425 aaKnown RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 ALAS2P22557 587 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 GALNT2Q10471 571 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 TEAD4Q15561 434 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 IFNLR1Q8IU57 520 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 OVCA2Q8WZ82 227 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 WDR26Q9H7D7 661 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 EGFL7Q9UHF1 273 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 GLI3P10071 1580 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 PIPSLA2A3N6 862 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 CLPTM1O96005 669 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 RHOP08100 348 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 PSMB9P28065 219 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 TM4SF4P48230 202 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 CCNHP51946 323 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 SLC7A2P52569 658 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 OLIG2Q13516 323 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 RTP2Q5QGT7 225 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 AMZ2Q86W34 360 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 C12orf76Q8N812 135 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 PTCD3Q96EY7 689 aaKnown RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 MCCC1Q96RQ3 725 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 POLR1DQ9Y2S0 133 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 EDDM13A0A1B0GTR0 161 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 OR1F1O43749 312 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 MAN1A2O60476 641 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 C9orf64Q5T6V5 341 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 BRAT1Q6PJG6 821 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 PQLC3Q8N755 202 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 SETD9Q8NE22 299 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 MAGEE2Q8TD90 523 aaPredicted RBP14.75□□□□□ -0.05
COL17A1-201ENST00000353479 CDKN2AIPNLQ96HQ2 116 aa14.75□□□□□ -0.05
COL17A1-201ENST00000353479 C4AP0C0L4 1744 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms