RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 Q6ZSR6 202 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 NLRP9Q7RTR0 991 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 SNX20Q7Z614 316 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 CEP97Q8IW35 865 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 SFTPA2Q8IWL1 248 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 CPNE9Q8IYJ1 553 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 NXPE1Q8N323 547 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 FBXL6Q8N531 539 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 OR2T34Q8NGX1 318 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 CCL4L1Q8NHW4 92 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 ELMO1Q92556 727 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 GLYATL1Q969I3 302 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 ESAMQ96AP7 390 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 PDXPQ96GD0 296 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 SLC30A3Q99726 388 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 NRTNQ99748 197 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 OLFM1Q99784 485 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 RASSF4Q9H2L5 321 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 GPAMQ9HCL2 828 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 WSB2Q9NYS7 404 aaPredicted RBP9.11□□□□□ -0.95
USP4-202ENST00000351842 KIAA1549LQ6ZVL6 1849 aa9.11□□□□□ -0.95
USP4-202ENST00000351842 SLC7A4O43246 635 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 CDH16O75309 829 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 KRT37O76014 449 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 GUCA1CO95843 209 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ZNF30P17039 623 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 GCAP28676 217 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 IGFALSP35858 605 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SFSWAPQ12872 951 aaKnown RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 TMEM115Q12893 351 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 PRKG2Q13237 762 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 PLPP6Q8IY26 295 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 CFAP206Q8IYR0 622 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 KCTD4Q8WVF5 259 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.1□□□□□ -0.95
USP4-202ENST00000351842 MSANTD3Q96H12 275 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 FAM167BQ9BTA0 163 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 GTPBP2Q9BX10 602 aaKnown RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 FAM107BQ9H098 131 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TCEAL2Q9H3H9 227 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 TLK1Q9UKI8 766 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 AHCTF1Q8WYP5 2266 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 LRRK1Q38SD2 2015 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ARID1BQ8NFD5 2236 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 K7ESF4 209 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 FPGTO14772 594 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 KRT38O76015 456 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 S1PR4O95977 384 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 AVPR2P30518 371 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ABRQ12979 859 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ANGPT1Q15389 498 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SYTL3Q4VX76 610 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 FAM219BQ5XKK7 198 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TCEAL6Q6IPX3 200 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ZC3HC1Q86WB0 502 aaKnown RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 ZNF761Q86XN6 746 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 PHYKPLQ8IUZ5 450 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 CCNJLQ8IV13 435 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 AGR3Q8TD06 166 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 CALML6Q8TD86 181 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 DCAKDQ8WVC6 231 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TCEAL3Q969E4 200 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TTC1Q99614 292 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SHCBP1LQ9BZQ2 653 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SIRPGQ9P1W8 387 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ATXN10Q9UBB4 475 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 GMEB2Q9UKD1 530 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 RP1P56715 2156 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 FAM159BA6NKW6 160 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 PRMT5O14744 637 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 IGHV4-34P06331 123 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 THEGLP0DJG4 465 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 MYF5P13349 255 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 BRAFP15056 766 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ZNF7P17097 686 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 KCNA4P22459 653 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SPRP35270 261 aaPredicted RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 TTPAP49638 278 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 ITGA9Q13797 1035 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 E2F5Q15329 346 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TTMPQ5BVD1 217 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 HECTD2Q5U5R9 776 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 PNCKQ6P2M8 343 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 PAQR3Q6TCH7 311 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 PIWIL4Q7Z3Z4 852 aaKnown RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 RAVER1Q8IY67 606 aaKnown RBP9.1□□□□□ -0.95
USP4-202ENST00000351842 DTWD2Q8NBA8 298 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SLC44A1Q8WWI5 657 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 RAB7BQ96AH8 199 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 FGF22Q9HCT0 170 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 SNX15Q9NRS6 342 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 TMEM74BQ9NUR3 256 aa9.1□□□□□ -0.95
USP4-202ENST00000351842 A0A096LPK6 155 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 FFAR2O15552 330 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CCDC166P0CW27 439 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 ZNF8P17098 575 aaPredicted RBP9.09□□□□□ -0.95
USP4-202ENST00000351842 ACRV1P26436 265 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 CDK3Q00526 305 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 BIRC2Q13490 618 aa9.09□□□□□ -0.95
USP4-202ENST00000351842 GTF2H3Q13889 308 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms