RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C1orf232A0A0U1RR37 186 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 CAPN8A6NHC0 703 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 WASH3PC4AMC7 463 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 BNIP3LO60238 219 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 SLC34A2O95436 690 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 NFATC1O95644 943 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 PYGLP06737 847 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 SRPRAP08240 638 aaKnown RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 RBP1P09455 135 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 CISD3P0C7P0 127 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 PPARGP37231 505 aaPredicted RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 GLRBP48167 497 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 AQP4P55087 323 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 CDKN2DP55273 166 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 POLR2LP62875 67 aaKnown RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 CACNG1Q06432 222 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 DLG1Q12959 904 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 PEX6Q13608 980 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 CSHL1Q14406 222 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 PTPRRQ15256 657 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 GRAMD1BQ3KR37 738 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-201ENST00000345005 ZRANB3Q5FWF4 1079 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 TMEM215Q68D42 235 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 ZNF549Q6P9A3 640 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 DPY19L3Q6ZPD9 716 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 PNPLA1Q8N8W4 532 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 KYQ8NBH2 561 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 HEXDCQ8WVB3 486 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.72□□□□□ -0.377e-11■■■■■ 32
CLK3-201ENST00000345005 ECHDC3Q96DC8 303 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 UBXN10Q96LJ8 280 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 LYSMD1Q96S90 227 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 AARSD1Q9BTE6 412 aaKnown RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 CDH19Q9H159 772 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 ZDHHC6Q9H6R6 413 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 ZNF395Q9H8N7 513 aaPredicted RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 IGSF5Q9NSI5 407 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 THG1LQ9NWX6 298 aaKnown RBP12.72□□□□□ -0.37
CLK3-201ENST00000345005 VTI1BQ9UEU0 232 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 BLOC1S6Q9UL45 172 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 SLC27A6Q9Y2P4 619 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 SLC30A1Q9Y6M5 507 aa12.72□□□□□ -0.37
CLK3-201ENST00000345005 C15orf38-AP3S2A0A0A6YYH1 394 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 UBA6A0AVT1 1052 aaPredicted RBP12.71□□□□□ -0.38
CLK3-201ENST00000345005 TARM1B6A8C7 271 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 TK2O00142 265 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 TXNDC9O14530 226 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 ZNF195O14628 629 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 ITM2AO43736 263 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 WISP3O95389 354 aaPredicted RBP12.71□□□□□ -0.38
CLK3-201ENST00000345005 HSPA4LO95757 839 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 SBK3P0C264 359 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 SUOXP51687 545 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 PTPN5P54829 565 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 KLF10Q13118 480 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 ACAP2Q15057 778 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 GEN1Q17RS7 908 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 LIPMQ5VYY2 423 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 USP45Q70EL2 814 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 ARPINQ7Z6K5 226 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 STK40Q8N2I9 435 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 TRPC4APQ8TEL6 797 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 LPGAT1Q92604 370 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 SCRN2Q96FV2 425 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 SORT1Q99523 831 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 HAUS8Q9BT25 410 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 ILKAPQ9H0C8 392 aaPredicted RBP12.71□□□□□ -0.38
CLK3-201ENST00000345005 APPL1Q9UKG1 709 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 DMTF1Q9Y222 760 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 COMMD10Q9Y6G5 202 aa12.71□□□□□ -0.38
CLK3-201ENST00000345005 PIKFYVEQ9Y2I7 2098 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 HEPACAM2A8MVW5 462 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 MEI4A8MW99 385 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 TRIM24O15164 1050 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 SRP72O76094 671 aaKnown RBP12.7□□□□□ -0.38
CLK3-201ENST00000345005 PRSS56P0CW18 603 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 PEX2P28328 305 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 FMO4P31512 558 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 PTGER3P43115 390 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 CREB5Q02930 508 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 PDGFRLQ15198 375 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 CDKN3Q16667 212 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 LPCAT4Q643R3 524 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 PSAPL1Q6NUJ1 521 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 GDPD4Q6W3E5 623 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 CERS6Q6ZMG9 384 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 TPRG1Q6ZUI0 275 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 Q6ZVU0 165 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 GET4Q7L5D6 327 aaPredicted RBP12.7□□□□□ -0.38
CLK3-201ENST00000345005 TAS2R42Q7RTR8 314 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 PIANPQ8IYJ0 282 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 CBARPQ8N350 705 aaPredicted RBP12.7□□□□□ -0.38
CLK3-201ENST00000345005 CPSF7Q8N684 471 aaKnown RBP12.7□□□□□ -0.38
CLK3-201ENST00000345005 OR2A12Q8NGT7 310 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 EID2BQ96D98 161 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 CCDC126Q96EE4 140 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 MRGPRX3Q96LB0 322 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 HEPHQ9BQS7 1158 aa12.7□□□□□ -0.38
CLK3-201ENST00000345005 NSUN3Q9H649 340 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms