RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SYNDIG1LA6NDD5 238 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 GLOD5A6NK44 160 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 HNRNPCL2B2RXH8 293 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 SLC16A5O15375 505 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 FIBPO43427 364 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 BUD23O43709 281 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ENTPD3O75355 529 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 AVILO75366 819 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PPP1R3DO95685 299 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 FGF3P11487 239 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PLA2G2AP14555 144 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 MMP9P14780 707 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PRLRP16471 622 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 CORO1AP31146 461 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 LMAN1P49257 510 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ARSEP51690 589 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 CTSCP53634 463 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 RRP1P56182 461 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 BRWD1-AS2P59051 145 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 CXCL9Q07325 125 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF234Q14588 700 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 TOMM20Q15388 145 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM35AQ53FP2 167 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 C9orf57Q5W0N0 161 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ZDHHC20Q5W0Z9 365 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF324BQ6AW86 544 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 UNQ6126/PRO20091Q6UXV3 157 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ENOSF1Q7L5Y1 443 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PRPF39Q86UA1 669 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 KBTBD6Q86V97 674 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 CCDC89Q8N998 374 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 IL17RCQ8NAC3 791 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 ACVR1CQ8NER5 493 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 HMGCLL1Q8TB92 370 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PPP4R1Q8TF05 950 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 DUSP19Q8WTR2 217 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 SNRNP27Q8WVK2 155 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 SLC22A18Q96BI1 424 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 IGSF21Q96ID5 467 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 NEURL2Q9BR09 285 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 RTN4RQ9BZR6 473 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 RAD21L1Q9H4I0 556 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 DNAJC18Q9H819 358 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PDE7BQ9NP56 450 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 MARCH4Q9P2E8 410 aaPredicted RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 MALT1Q9UDY8 824 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 AMACRQ9UHK6 382 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PCDHGB1Q9Y5G3 927 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 PCDHAC2Q9Y5I4 1007 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 GREB1LQ9C091 1923 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 CGNL1Q0VF96 1302 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 IGHV4OR15-8A0A075B7B6 117 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 PLSCR5A0PG75 271 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 DENND3A2RUS2 1198 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 C4orf47A7E2U8 309 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF587BE7ETH6 402 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 CLGNO14967 610 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ZNHIT1O43257 154 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 PLPP2O43688 288 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF217O75362 1048 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 CAMTA2O94983 1202 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 CSPG5O95196 566 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 KCNK5O95279 499 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 AFPP02771 609 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TUBBP07437 444 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TGFB3P10600 412 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 MYOD1P15172 320 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 POLR2CP19387 275 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 KCNA5P22460 613 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 HRH2P25021 359 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 HSD17B4P51659 736 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 STAT2P52630 851 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 RELQ04864 619 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 CALD1Q05682 793 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SLC20A2Q08357 652 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE2BQ13066 116 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 BAATQ14032 418 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ASIC2Q16515 512 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 MEP1AQ16819 746 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 IZUMO4Q1ZYL8 232 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE2EQ4V326 116 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF585BQ52M93 769 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 FAM109BQ6ICB4 259 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 GAGE2AQ6NT46 116 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 GFRALQ6UXV0 394 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 PLEKHM3Q6ZWE6 761 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TUBA1AQ71U36 451 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 MEPCEQ7L2J0 689 aaKnown RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ATG9AQ7Z3C6 839 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 ARMC9Q7Z3E5 817 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TMEM219Q86XT9 240 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 KMT5CQ86Y97 462 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 MAP7D3Q8IWC1 876 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SLC5A8Q8N695 610 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SMRP1Q8NCR6 262 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 MCUQ8NE86 351 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 LNX1Q8TBB1 728 aaPredicted RBP3.27□□□□□ -1.89
HMGB1-201ENST00000326004 SLC20A1Q8WUM9 679 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 TMEM255BQ8WV15 326 aa3.27□□□□□ -1.89
HMGB1-201ENST00000326004 DDOQ99489 341 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms