RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SCN8AQ9UQD0 1980 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 A8MX80 341 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 MATN4O95460 622 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 ESR1P03372 595 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 CAPNS1P04632 268 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 PRR35P0CG20 571 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 ARL1P40616 181 aaPredicted RBP19.85■□□□□ 0.77
VPS53-201ENST00000291074 CYP4F8P98187 520 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 CACNG1Q06432 222 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 MTX3Q5HYI7 312 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 ARMC12Q5T9G4 340 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 TXNDC11Q6PKC3 985 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 SLC15A3Q8IY34 581 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 LKAAEAR1Q8TD35 194 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 HSFX1Q9UBD0 423 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 RAB26Q9ULW5 256 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 TRIM17Q9Y577 477 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 MYOCOSA0A1B0GUC4 107 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 PGLSO95336 258 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 CYBBP04839 570 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 IDO1P14902 403 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 HMGCLP35914 325 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 XKR7Q5GH72 579 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 HMBOX1Q6NT76 420 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 BLOC1S3Q6QNY0 202 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 GPRIN3Q6ZVF9 776 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 EGFL6Q8IUX8 553 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 MFN1Q8IWA4 741 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 SLC39A11Q8N1S5 342 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 OR56A4Q8NGH8 313 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 VWCEQ96DN2 955 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 IL21Q9HBE4 155 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 CMTM6Q9NX76 183 aa19.85■□□□□ 0.77
VPS53-201ENST00000291074 ASPDHA6ND91 283 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 GAPDHSO14556 408 aaPredicted RBP19.84■□□□□ 0.77
VPS53-201ENST00000291074 BAIAP3O94812 1187 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 PRAMEF1O95521 474 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 UROSP10746 265 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 ZNF26P17031 533 aaPredicted RBP19.84■□□□□ 0.77
VPS53-201ENST00000291074 SEMG2Q02383 582 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 PAF1Q8N7H5 531 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 CANT1Q8WVQ1 401 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 COQ10BQ9H8M1 238 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 AIG1Q9NVV5 245 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 DNMT3BQ9UBC3 853 aaKnown RBP19.84■□□□□ 0.77
VPS53-201ENST00000291074 APPL1Q9UKG1 709 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 PRMT5O14744 637 aaPredicted RBP19.84■□□□□ 0.77
VPS53-201ENST00000291074 FKTNO75072 461 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 TIPRLO75663 272 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 PGM3O95394 542 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 MLYCDO95822 493 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 SMIM18P0DKX4 95 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 EPHB3P54753 998 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 ERVPABLB-1P60509 514 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 UFM1P61960 85 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 TLE2Q04725 743 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 RAB33AQ14088 237 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 IKBKEQ14164 716 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 TRIM60Q495X7 471 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 LIN52Q52LA3 116 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 OGFOD2Q6N063 350 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 LETMD1Q6P1Q0 360 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 Q6ZNB5 142 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 SERPINA9Q86WD7 417 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 CLDN19Q8N6F1 224 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 DCAF4L2Q8NA75 395 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 RNF217Q8TC41 542 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 DDI1Q8WTU0 396 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 ZNF558Q96NG5 402 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 ABCD2Q9UBJ2 740 aa19.84■□□□□ 0.77
VPS53-201ENST00000291074 TYW5A2RUC4 315 aaKnown RBP19.83■□□□□ 0.77
VPS53-201ENST00000291074 GFRA2O00451 464 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 CD9P21926 228 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 SLC6A2P23975 617 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 SLC7A1P30825 629 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 ZFP36L2P47974 494 aaKnown RBP19.83■□□□□ 0.77
VPS53-201ENST00000291074 HTR6P50406 440 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 LRRC58Q96CX6 371 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 NUSAP1Q9BXS6 441 aaKnown RBP19.83■□□□□ 0.77
VPS53-201ENST00000291074 SEZ6LQ9BYH1 1024 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 CIPCQ9C0C6 399 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 TNKS2Q9H2K2 1166 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 Q9H521 79 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 NOL11Q9H8H0 719 aaKnown RBP19.83■□□□□ 0.77
VPS53-201ENST00000291074 MAGEE1Q9HCI5 957 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 PRSS21Q9Y6M0 314 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 DOCK6Q96HP0 2047 aa19.83■□□□□ 0.77
VPS53-201ENST00000291074 C1orf232A0A0U1RR37 186 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 C7orf72A4D263 438 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 CHEK2O96017 543 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 URODP06132 367 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 SOX11P35716 441 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 ADARP55265 1226 aaKnown RBP19.83■□□□□ 0.76
VPS53-201ENST00000291074 FAM43BQ6ZT52 329 aaPredicted RBP19.83■□□□□ 0.76
VPS53-201ENST00000291074 FRA10AC1Q70Z53 315 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 FAM192AQ9GZU8 254 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 DHRS7Q9Y394 339 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 MYOFQ9NZM1 2061 aa19.83■□□□□ 0.76
VPS53-201ENST00000291074 NRG2O14511 850 aaPredicted RBP19.82■□□□□ 0.76
VPS53-201ENST00000291074 GIPC1O14908 333 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms