RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 POLR3HQ9Y535 204 aaPredicted RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 AK5Q9Y6K8 562 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 MSI1O43347 362 aaKnown RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 KLHL18O94889 574 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 KIR3DL1P43629 444 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 SLC5A3P53794 718 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 FSTL1Q12841 308 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 DLG2Q15700 870 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 TMEM44Q2T9K0 475 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 PPM1JQ5JR12 505 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 DEF8Q6ZN54 512 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 NDRG1Q92597 394 aaKnown RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 C5orf34Q96MH7 638 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 TAPBPLQ9BX59 468 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 CLK4Q9HAZ1 481 aaKnown RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 GRHL1Q9NZI5 618 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 ZNF180Q9UJW8 692 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 ITPKBP27987 946 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 LSM3P62310 102 aaKnown RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 MTX3Q5HYI7 312 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 SPRYD7Q5W111 196 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 OR2T12Q8NG77 320 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 GPR152Q8TDT2 470 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 IL1RAPQ9NPH3 570 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 A0A0J9YYE9 177 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 KERAO60938 352 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 PRPS2P11908 318 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 ZNF37AP17032 561 aaPredicted RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 NDUFS1P28331 727 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 HOXC12P31275 282 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 QPRTQ15274 297 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 TBC1D25Q3MII6 688 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 SULT1C3Q6IMI6 304 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 OSBPL7Q9BZF2 842 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 SIX2Q9NPC8 291 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 FANCFQ9NPI8 374 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 FNIP2Q9P278 1114 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 MAFBQ9Y5Q3 323 aaPredicted RBP18.99■□□□□ 0.63
UPF1-201ENST00000262803 PTPRJQ12913 1337 aa18.99■□□□□ 0.63
UPF1-201ENST00000262803 DNM1LO00429 736 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 PGRMC2O15173 223 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 NELFEP18615 380 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 AVPR1BP47901 424 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ZNF132P52740 706 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 GNA12Q03113 381 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 METTL21CQ5VZV1 264 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 TTLQ8NG68 377 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 UBASH3BQ8TF42 649 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ELL3Q9HB65 397 aaPredicted RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 DNAJC28Q9NX36 388 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 RHPN2P1A8MT19 583 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 AP2A1O95782 977 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 LPIN1Q14693 890 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ZNF697Q5TEC3 545 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 TFAP2BQ92481 460 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 NUSAP1Q9BXS6 441 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 PDZD7Q9H5P4 517 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 IFT80Q9P2H3 777 aaPredicted RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 RBM7Q9Y580 266 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 BTBD19C9JJ37 291 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 SIN3BO75182 1162 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 EPHX1P07099 455 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 PRKAR1AP10644 381 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ETS2P15036 469 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 PRDX6P30041 224 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 SRSF11Q05519 484 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 SLC5A9Q2M3M2 681 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 RGS21Q2M5E4 152 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 HKDC1Q2TB90 917 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 LCN1P1Q5VSP4 162 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ZCCHC12Q6PEW1 402 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ANKS1BQ7Z6G8 1248 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 PLEKHG4BQ96PX9 1271 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 EIF2B3Q9NR50 452 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 RAPGEFL1Q9UHV5 662 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ABHD14A-ACY1A0A1B0GW23 586 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 CCDC182A6NF36 153 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 TLX3O43711 291 aaPredicted RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 RNASEH2AO75792 299 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 TFPIP10646 304 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 CAMK1Q14012 370 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 GPR107Q5VW38 600 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 TDRPQ86YL5 185 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 SNX27Q96L92 541 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 EPB41L1Q9H4G0 881 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 THUMPD1Q9NXG2 353 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 HCN3Q9P1Z3 774 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 GPR25O00155 361 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 MATN3O15232 486 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 TSPAN1O60635 241 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 GNSP15586 552 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 SP2Q02086 613 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 GALNT7Q86SF2 657 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 NXNL1Q96CM4 212 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 ZHX1-C8orf76Q96EF9 292 aa18.98■□□□□ 0.63
UPF1-201ENST00000262803 SSU72Q9NP77 194 aaKnown RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 ZNF490Q9ULM2 529 aaPredicted RBP18.98■□□□□ 0.63
UPF1-201ENST00000262803 FPGTO14772 594 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 CBX5P45973 191 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ZNF155Q12901 538 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms