RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 GPR33Q49SQ1 333 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 REP15Q6BDI9 236 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 C22orf39Q6P5X5 142 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 ADAMTSL2Q86TH1 951 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 KBTBD6Q86V97 674 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CBARPQ8N350 705 aaPredicted RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 MRPL43Q8N983 215 aaKnown RBP12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 OR56A4Q8NGH8 313 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 KCNA7Q96RP8 456 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 HGH1Q9BTY7 390 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CIPCQ9C0C6 399 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 VCX3BQ9H321 246 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PFDN4Q9NQP4 134 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 CRLS1Q9UJA2 301 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 PACSIN3Q9UKS6 424 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 LRCH1Q9Y2L9 728 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 BOLA1Q9Y3E2 137 aa12.8□□□□□ -0.36
SPTLC1-201ENST00000262554 MYOFQ9NZM1 2061 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 DOCK6Q96HP0 2047 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 TRBV5-4A0A0C4DH59 114 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 HIDE1A8MVS5 230 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 BNIP3LO60238 219 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ESRRBO95718 433 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 S100BP04271 92 aaPredicted RBP12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ALDOCP09972 364 aaKnown RBP12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 LINC00032P0C843 101 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 UROSP10746 265 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 BPIP17213 487 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 LBPP18428 481 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 CTNNB1P35222 781 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 DPP6P42658 865 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 HK3P52790 923 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 EPHA5P54756 1037 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 PSME3P61289 254 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 IRX1P78414 480 aaPredicted RBP12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 CEACAM7Q14002 265 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 TEAD2Q15562 447 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 TGFBIQ15582 683 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 FUT11Q495W5 492 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 FBXO48Q5FWF7 155 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 FAM219BQ5XKK7 198 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 USP45Q70EL2 814 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 RTL10Q7L3V2 364 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ZSWIM9Q86XI8 627 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ZNF557Q8N988 423 aaPredicted RBP12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 TUBGCP3Q96CW5 907 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ASIC4Q96FT7 647 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 LYSMD1Q96S90 227 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 CEP44Q9C0F1 390 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 TUBB1Q9H4B7 451 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 FBRSL1Q9HCM7 1045 aaKnown RBP12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 CACNA2D2Q9NY47 1150 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 ADA2Q9NZK5 511 aa12.79□□□□□ -0.36
SPTLC1-201ENST00000262554 NPIPB15A6NHN6 443 aaPredicted RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 BBIP1A8MTZ0 92 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 A8MX80 341 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 NEDD8-MDP1E9PL57 170 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TRIM38O00635 465 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 FBP2O00757 339 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 NRP2O60462 931 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 XRCC1P18887 633 aaPredicted RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 GPX3P22352 226 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 DGKAP23743 735 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 LRP8Q14114 963 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 CHRNA6Q15825 494 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 PAOXQ6QHF9 649 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TPRG1Q6ZUI0 275 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 SYVN1Q86TM6 617 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TMEM25Q86YD3 366 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 MYO1HQ8N1T3 1032 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 MIER2Q8N344 545 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 PCDH20Q8N6Y1 951 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TCEAL4Q96EI5 215 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 SCRN2Q96FV2 425 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 RAD9AQ99638 391 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 BOCQ9BWV1 1114 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 BBS2Q9BXC9 721 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 CPEB1Q9BZB8 566 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 SUV39H2Q9H5I1 410 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TDP1Q9NUW8 608 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 POLG2Q9UHN1 485 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 EIF2B4Q9UI10 523 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 SARDHQ9UL12 918 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 BTRCQ9Y297 605 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 PCDHGA7Q9Y5G6 932 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TNPO3Q9Y5L0 923 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 PTGDR2Q9Y5Y4 395 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 E2F3O00716 465 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 MRASO14807 208 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 RAD51BO15315 384 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 SLC25A14O95258 325 aaPredicted RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 TRIM16O95361 564 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 POP4O95707 220 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 PABPC1P11940 636 aaKnown RBP12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 BMP1P13497 986 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 HGFP14210 728 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 UGT1A6P19224 532 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 UGT1A1P22309 533 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 UGT1A4P22310 534 aa12.78□□□□□ -0.36
SPTLC1-201ENST00000262554 UGT1A3P35503 534 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms