RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MPP6Q9NZW5 540 aa14.25□□□□□ -0.13
SDC1-201ENST00000254351 SUN2Q9UH99 717 aa14.25□□□□□ -0.13
SDC1-201ENST00000254351 LOC100506127A0A0U1RQW1 187 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 SLC1A7O00341 560 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 RBP1P09455 135 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 DNAJB13P59910 316 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 TNFAIP2Q03169 654 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 CACNB2Q08289 660 aaPredicted RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 OR4D1Q15615 310 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 DGUOKQ16854 277 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 LRIT3Q3SXY7 679 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ARL13BQ3SXY8 428 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 BLOC1S3Q6QNY0 202 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 MFSD4AQ8N468 514 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ATPAF2Q8N5M1 289 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PDPRQ8NCN5 879 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PTCD2Q8WV60 388 aaKnown RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 ZFYVE19Q96K21 471 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 NPY6RQ99463 290 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 BBS2Q9BXC9 721 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 RNF167Q9H6Y7 350 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PGAP2Q9UHJ9 254 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ASB14A6NK59 587 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 CCNKO75909 580 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 KCNK2O95069 426 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PGLSO95336 258 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 FYNP06241 537 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 CD40LGP29965 261 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PHC1P78364 1004 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 VAC14Q08AM6 782 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 NKG7Q16617 165 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 SULT1C3Q6IMI6 304 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 DENND5AQ6IQ26 1287 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 CDYL2Q8N8U2 506 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 C2CD4AQ8NCU7 369 aaPredicted RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 OR10A6Q8NH74 314 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 MCFD2Q8NI22 146 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ATL1Q8WXF7 558 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ZNF486Q96H40 463 aaPredicted RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 FAM167AQ96KS9 214 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 HSFY1Q96LI6 401 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ASPSCR1Q9BZE9 553 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 NUP214P35658 2090 aaPredicted RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 MYO1GB0I1T2 1018 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 UPK1AO00322 258 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 IL12AP29459 219 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 PIK3CGP48736 1102 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 ALDH7A1P49419 539 aaKnown RBP14.24□□□□□ -0.13
SDC1-201ENST00000254351 RAPSNQ13702 412 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 RBBP7Q16576 425 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 FBXO47Q5MNV8 452 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 STEAP3Q658P3 488 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 LAIR2Q6ISS4 152 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 TMEM179BQ7Z7N9 219 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 P2RY8Q86VZ1 359 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 APPL2Q8NEU8 664 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 GMIPQ9P107 970 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 VPS4AQ9UN37 437 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 SPO11Q9Y5K1 396 aa14.24□□□□□ -0.13
SDC1-201ENST00000254351 A0A1W2PP18 115 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 KATNA1O75449 491 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 SLC22A3O75751 556 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 DDNO94850 711 aaPredicted RBP14.23□□□□□ -0.13
SDC1-201ENST00000254351 CYBBP04839 570 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 HLA-DQB2P05538 268 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 LCKP06239 509 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 PAMP19021 973 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 CLK1P49759 484 aaKnown RBP14.23□□□□□ -0.13
SDC1-201ENST00000254351 CSRP3P50461 194 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 GTF2H3Q13889 308 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ATP6AP1LQ52LC2 224 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 PPP2R2DQ66LE6 453 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 DET1Q7L5Y6 550 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 TFAP2DQ7Z6R9 452 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 OR13J1Q8NGT2 312 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 PNPT1Q8TCS8 783 aaKnown RBP14.23□□□□□ -0.13
SDC1-201ENST00000254351 MBOAT4Q96T53 435 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ZBED2Q9BTP6 218 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ABCG8Q9H221 673 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 RNF39Q9H2S5 420 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 C14orf119Q9NWQ9 140 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 LOC100130705A0A1B0GUX0 176 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 TRIM64BA6NI03 449 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ARVCFO00192 962 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 TSPAN1O60635 241 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 DAB1O75553 588 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 CYP7B1O75881 506 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 ANGPTL1O95841 491 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 PFKLP17858 780 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 POLR2JP52435 117 aaKnown RBP14.23□□□□□ -0.13
SDC1-201ENST00000254351 HERVK_113P63132 956 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 CYP4F2P78329 520 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 CYP4F3Q08477 520 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 NPTX1Q15818 432 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 FAM98BQ52LJ0 330 aaKnown RBP14.23□□□□□ -0.13
SDC1-201ENST00000254351 GALNT10Q86SR1 603 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 COLGALT2Q8IYK4 626 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 PHACTR4Q8IZ21 702 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 B3GALNT2Q8NCR0 500 aa14.23□□□□□ -0.13
SDC1-201ENST00000254351 CALML6Q8TD86 181 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms