RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CALD1Q05682 793 aaKnown RBP23.68■■□□□ 1.38
CLN3-263ENST00000637871 CENPQQ7L2Z9 268 aaPredicted RBP23.68■■□□□ 1.38
CLN3-263ENST00000637871 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.68■■□□□ 1.38
CLN3-263ENST00000637871 RGPD2P0DJD1 1756 aa23.68■■□□□ 1.38
CLN3-263ENST00000637871 RGS17Q9UGC6 210 aaPredicted RBP23.66■■□□□ 1.38
CLN3-263ENST00000637871 RARSP54136 660 aaKnown RBP23.66■■□□□ 1.38
CLN3-263ENST00000637871 LARP1Q6PKG0 1096 aaKnown RBP23.66■■□□□ 1.38
CLN3-263ENST00000637871 UNC5CLQ8IV45 518 aa23.66■■□□□ 1.38
CLN3-263ENST00000637871 ANKRD24Q8TF21 1146 aa23.66■■□□□ 1.38
CLN3-263ENST00000637871 C20orf194Q5TEA3 1177 aa23.65■■□□□ 1.38
CLN3-263ENST00000637871 ERBB3P21860 1342 aa23.65■■□□□ 1.38
CLN3-263ENST00000637871 IL13P35225 146 aa23.64■■□□□ 1.38
CLN3-263ENST00000637871 EVA1CP58658 441 aa23.64■■□□□ 1.38
CLN3-263ENST00000637871 RSPH6AQ9H0K4 717 aa23.64■■□□□ 1.38
CLN3-263ENST00000637871 KIF24Q5T7B8 1368 aa23.64■■□□□ 1.37
CLN3-263ENST00000637871 BCAR3O75815 825 aa23.63■■□□□ 1.37
CLN3-263ENST00000637871 RIPK4P57078 832 aa23.63■■□□□ 1.37
CLN3-263ENST00000637871 TRIM35Q9UPQ4 493 aa23.63■■□□□ 1.37
CLN3-263ENST00000637871 CSB-PGBD3P0DP91 1061 aa23.62■■□□□ 1.37
CLN3-263ENST00000637871 ZNF428Q96B54 188 aa23.62■■□□□ 1.37
CLN3-263ENST00000637871 CANXP27824 592 aaKnown RBP23.62■■□□□ 1.37
CLN3-263ENST00000637871 LMOD3Q0VAK6 560 aa23.62■■□□□ 1.37
CLN3-263ENST00000637871 USP35Q9P2H5 1018 aa23.61■■□□□ 1.37
CLN3-263ENST00000637871 CCDC9Q9Y3X0 531 aaKnown RBP23.61■■□□□ 1.37
CLN3-263ENST00000637871 ATRNO75882 1429 aa23.6■■□□□ 1.37
CLN3-263ENST00000637871 WDR17Q8IZU2 1322 aa23.6■■□□□ 1.37
CLN3-263ENST00000637871 KDM2BQ8NHM5 1336 aa23.6■■□□□ 1.37
CLN3-263ENST00000637871 EIF4A2Q14240 407 aaKnown RBP23.6■■□□□ 1.37
CLN3-263ENST00000637871 PRKAR2BP31323 418 aa23.59■■□□□ 1.37
CLN3-263ENST00000637871 NFE2L2Q16236 605 aa23.59■■□□□ 1.37
CLN3-263ENST00000637871 TOM1L2Q6ZVM7 507 aa23.59■■□□□ 1.37
CLN3-263ENST00000637871 USHBP1Q8N6Y0 703 aa23.59■■□□□ 1.37
CLN3-263ENST00000637871 FAM208AQ9UK61 1670 aaKnown RBP23.59■■□□□ 1.37
CLN3-263ENST00000637871 GLI3P10071 1580 aa23.58■■□□□ 1.37
CLN3-263ENST00000637871 CRB1P82279 1406 aa23.58■■□□□ 1.37
CLN3-263ENST00000637871 ZNF772Q68DY9 489 aaPredicted RBP23.58■■□□□ 1.36
CLN3-263ENST00000637871 POTEAQ6S8J7 498 aa23.58■■□□□ 1.36
CLN3-263ENST00000637871 QTRT2Q9H974 415 aaKnown RBP23.58■■□□□ 1.36
CLN3-263ENST00000637871 NLRP2Q9NX02 1062 aa23.58■■□□□ 1.36
CLN3-263ENST00000637871 VPS72Q15906 364 aa23.57■■□□□ 1.36
CLN3-263ENST00000637871 TRPC5Q9UL62 973 aaPredicted RBP23.56■■□□□ 1.36
CLN3-263ENST00000637871 NBPF6Q5VWK0 638 aa23.55■■□□□ 1.36
CLN3-263ENST00000637871 NBPF4Q96M43 638 aa23.55■■□□□ 1.36
CLN3-263ENST00000637871 SPATA31A5Q5VU36 1347 aa23.55■■□□□ 1.36
CLN3-263ENST00000637871 SPATA31A7Q8IWB4 1347 aa23.55■■□□□ 1.36
CLN3-263ENST00000637871 RGPD1P0DJD0 1748 aa23.55■■□□□ 1.36
CLN3-263ENST00000637871 SPATA31A1Q5TZJ5 1347 aa23.54■■□□□ 1.36
CLN3-263ENST00000637871 GJD4Q96KN9 370 aaPredicted RBP23.52■■□□□ 1.36
CLN3-263ENST00000637871 EYA1Q99502 592 aa23.52■■□□□ 1.36
CLN3-263ENST00000637871 WNK3Q9BYP7 1800 aa23.52■■□□□ 1.36
CLN3-263ENST00000637871 ALDH1L2Q3SY69 923 aa23.51■■□□□ 1.35
CLN3-263ENST00000637871 ZKSCAN2Q63HK3 967 aa23.51■■□□□ 1.35
CLN3-263ENST00000637871 GNAI1P63096 354 aa23.51■■□□□ 1.35
CLN3-263ENST00000637871 CLUAP1Q96AJ1 413 aa23.51■■□□□ 1.35
CLN3-263ENST00000637871 CARD10Q9BWT7 1032 aa23.51■■□□□ 1.35
CLN3-263ENST00000637871 BRPF1P55201 1214 aaPredicted RBP23.5■■□□□ 1.35
CLN3-263ENST00000637871 EXOSC9Q06265 439 aaKnown RBP23.5■■□□□ 1.35
CLN3-263ENST00000637871 FAM98CQ17RN3 349 aaKnown RBP23.5■■□□□ 1.35
CLN3-263ENST00000637871 IPO8O15397 1037 aaKnown RBP23.49■■□□□ 1.35
CLN3-263ENST00000637871 AEBP1Q8IUX7 1158 aa23.49■■□□□ 1.35
CLN3-263ENST00000637871 IFT57Q9NWB7 429 aa23.49■■□□□ 1.35
CLN3-263ENST00000637871 FRAT1Q92837 279 aaPredicted RBP23.48■■□□□ 1.35
CLN3-263ENST00000637871 IGSF1Q8N6C5 1336 aa23.48■■□□□ 1.35
CLN3-263ENST00000637871 HMOX1P09601 288 aa23.47■■□□□ 1.35
CLN3-263ENST00000637871 KIF16BQ96L93 1317 aa23.47■■□□□ 1.35
CLN3-263ENST00000637871 MEGF6O75095 1541 aa23.46■■□□□ 1.35
CLN3-263ENST00000637871 NCAPD2Q15021 1401 aa23.45■■□□□ 1.35
CLN3-263ENST00000637871 RBM6P78332 1123 aaKnown RBP23.45■■□□□ 1.34
CLN3-263ENST00000637871 TSR2Q969E8 191 aaKnown RBP23.45■■□□□ 1.34
CLN3-263ENST00000637871 THSD7AQ9UPZ6 1657 aa23.45■■□□□ 1.34
CLN3-263ENST00000637871 A0A0G2JS52 829 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 RXRBP28702 533 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 MYT1Q01538 1121 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 SULT6B1Q6IMI4 303 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 DZIP1LQ8IYY4 767 aaKnown RBP23.44■■□□□ 1.34
CLN3-263ENST00000637871 PHACTR3Q96KR7 559 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 SMC4Q9NTJ3 1288 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 COG6Q9Y2V7 657 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 DISP2A7MBM2 1401 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 PDE4AP27815 886 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 PANK1Q8TE04 598 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 BACH2Q9BYV9 841 aa23.44■■□□□ 1.34
CLN3-263ENST00000637871 LRRC37A3O60309 1634 aa23.43■■□□□ 1.34
CLN3-263ENST00000637871 ZNF853P0CG23 659 aa23.43■■□□□ 1.34
CLN3-263ENST00000637871 ANP32AP39687 249 aaKnown RBP23.43■■□□□ 1.34
CLN3-263ENST00000637871 CHMP4BQ9H444 224 aaKnown RBP23.43■■□□□ 1.34
CLN3-263ENST00000637871 RGS12O14924 1447 aa23.43■■□□□ 1.34
CLN3-263ENST00000637871 FTSJ3Q8IY81 847 aaKnown RBP23.42■■□□□ 1.34
CLN3-263ENST00000637871 MVPQ14764 893 aaKnown RBP23.41■■□□□ 1.34
CLN3-263ENST00000637871 CFAP44Q96MT7 982 aa23.41■■□□□ 1.34
CLN3-263ENST00000637871 PARP4Q9UKK3 1724 aaKnown RBP23.41■■□□□ 1.34
CLN3-263ENST00000637871 ATF7IPQ6VMQ6 1270 aa23.41■■□□□ 1.34
CLN3-263ENST00000637871 BARGINQ6ZT62 677 aa23.41■■□□□ 1.34
CLN3-263ENST00000637871 THRAP3Q9Y2W1 955 aaKnown RBP23.41■■□□□ 1.34
CLN3-263ENST00000637871 BRWD3Q6RI45 1802 aa23.4■■□□□ 1.34
CLN3-263ENST00000637871 IL2RBP14784 551 aa23.4■■□□□ 1.34
CLN3-263ENST00000637871 SSH1Q8WYL5 1049 aa23.4■■□□□ 1.34
CLN3-263ENST00000637871 ARHGAP45Q92619 1136 aa23.4■■□□□ 1.34
CLN3-263ENST00000637871 DDX19BQ9UMR2 479 aa23.4■■□□□ 1.34
CLN3-263ENST00000637871 KDRP35968 1356 aa23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms