RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	KLHL40	Q2TBA0	621 aa		13.27	□□□□□ -0.28
CHD2-223	ENST00000636306	CLUAP1	Q96AJ1	413 aa		13.27	□□□□□ -0.28
CHD2-223	ENST00000636306	COG3	Q96JB2	828 aa		13.27	□□□□□ -0.28
CHD2-223	ENST00000636306	XPC	Q01831	940 aa	Predicted RBP	13.27	□□□□□ -0.29
CHD2-223	ENST00000636306	ZNF830	Q96NB3	372 aa	Predicted RBP	13.27	□□□□□ -0.29
CHD2-223	ENST00000636306	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.26	□□□□□ -0.29	1e-7	■□□□□ 8.7
CHD2-223	ENST00000636306	FCHSD2	O94868	740 aa		13.25	□□□□□ -0.29
CHD2-223	ENST00000636306	SPRYD3	Q8NCJ5	442 aa		13.25	□□□□□ -0.29
CHD2-223	ENST00000636306	ANKAR	Q7Z5J8	1434 aa		13.25	□□□□□ -0.29
CHD2-223	ENST00000636306	CDK11B	P21127	795 aa	Known RBP	13.25	□□□□□ -0.29
CHD2-223	ENST00000636306	NEUROD2	Q15784	382 aa		13.25	□□□□□ -0.29
CHD2-223	ENST00000636306	LTK	P29376	864 aa		13.24	□□□□□ -0.29
CHD2-223	ENST00000636306	USP6	P35125	1406 aa		13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	TMPO	P42166	694 aa	Known RBP	13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	PLEKHF1	Q96S99	279 aa		13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	RRP7A	Q9Y3A4	280 aa	Known RBP	13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	FMN2	Q9NZ56	1722 aa		13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	PTPRU	Q92729	1446 aa		13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	ADAMTSL3	P82987	1691 aa		13.23	□□□□□ -0.29
CHD2-223	ENST00000636306	PLEKHG3	A1L390	1219 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	CEBPA	P49715	358 aa	Predicted RBP	13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	TTC21A	Q8NDW8	1320 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	CBX1	P83916	185 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	LMOD3	Q0VAK6	560 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	TEX2	Q8IWB9	1127 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	POLK	Q9UBT6	870 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	USP54	Q70EL1	1684 aa		13.22	□□□□□ -0.29
CHD2-223	ENST00000636306	OVOS2	A0A0J9YW53	1432 aa		13.21	□□□□□ -0.29
CHD2-223	ENST00000636306	OVOS2	Q6IE36	1432 aa		13.21	□□□□□ -0.29
CHD2-223	ENST00000636306	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.21	□□□□□ -0.29
CHD2-223	ENST00000636306	PDZRN3	Q9UPQ7	1066 aa		13.21	□□□□□ -0.29
CHD2-223	ENST00000636306	PRR36	Q9H6K5	1346 aa		13.21	□□□□□ -0.29
CHD2-223	ENST00000636306	CHRM1	P11229	460 aa	Predicted RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	GABPB1	Q06547	395 aa	Predicted RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	NME9	Q86XW9	330 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	ZNF710	Q8N1W2	664 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	DNAJC2	Q99543	621 aa	Known RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	AMOTL2	Q9Y2J4	779 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	DMRT2	Q9Y5R5	561 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	RARS	P54136	660 aa	Known RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	KIAA2012	Q0VF49	1180 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	FEZ1	Q99689	392 aa		13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	RWDD1	Q9H446	243 aa	Predicted RBP	13.2	□□□□□ -0.3
CHD2-223	ENST00000636306	CHD2	O14647	1828 aa	Known RBP	13.19	□□□□□ -0.3
CHD2-223	ENST00000636306	TTC21B	Q7Z4L5	1316 aa		13.19	□□□□□ -0.3
CHD2-223	ENST00000636306	SLC26A8	Q96RN1	970 aa		13.19	□□□□□ -0.3
CHD2-223	ENST00000636306	ARID3A	Q99856	593 aa		13.19	□□□□□ -0.3
CHD2-223	ENST00000636306	ACE	P12821	1306 aa		13.18	□□□□□ -0.3
CHD2-223	ENST00000636306	BCAR3	O75815	825 aa		13.18	□□□□□ -0.3
CHD2-223	ENST00000636306	ATP2B3	Q16720	1220 aa		13.18	□□□□□ -0.3
CHD2-223	ENST00000636306	ZNF428	Q96B54	188 aa		13.18	□□□□□ -0.3
CHD2-223	ENST00000636306	DDX49	Q9Y6V7	483 aa	Known RBP	13.18	□□□□□ -0.3
CHD2-223	ENST00000636306	CCDC66	A2RUB6	948 aa		13.17	□□□□□ -0.3
CHD2-223	ENST00000636306	PRKAR2B	P31323	418 aa		13.17	□□□□□ -0.3
CHD2-223	ENST00000636306	NFE2L2	Q16236	605 aa		13.17	□□□□□ -0.3
CHD2-223	ENST00000636306	SETD1B	Q9UPS6	1966 aa	Known RBP	13.17	□□□□□ -0.3
CHD2-223	ENST00000636306	USP31	Q70CQ4	1352 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	KIF16B	Q96L93	1317 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	TSPYL1	Q9H0U9	437 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	RBSN	Q9H1K0	784 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	TRIM35	Q9UPQ4	493 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	KIF3A	Q9Y496	699 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	SSH2	Q76I76	1423 aa		13.16	□□□□□ -0.3
CHD2-223	ENST00000636306	IL13	P35225	146 aa		13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	FAM193A	P78312	1265 aa		13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	EMILIN1	Q9Y6C2	1016 aa		13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	RGPD1	P0DJD0	1748 aa		13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	DLG5	Q8TDM6	1919 aa		13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	RGPD8	O14715	1765 aa	Predicted RBP	13.15	□□□□□ -0.3
CHD2-223	ENST00000636306	MFAP1	P55081	439 aa	Known RBP	13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	ZSCAN23	Q3MJ62	389 aa		13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	ZKSCAN2	Q63HK3	967 aa		13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	ANKLE2	Q86XL3	938 aa		13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	PDCL2	Q8N4E4	241 aa		13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	OGFR	Q9NZT2	677 aa		13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	CGN	Q9P2M7	1197 aa	Known RBP	13.15	□□□□□ -0.31
CHD2-223	ENST00000636306	KIF24	Q5T7B8	1368 aa		13.14	□□□□□ -0.31
CHD2-223	ENST00000636306	PIK3C2A	O00443	1686 aa		13.14	□□□□□ -0.31
CHD2-223	ENST00000636306	VGLL3	A8MV65	326 aa		13.14	□□□□□ -0.31
CHD2-223	ENST00000636306	BAG4	O95429	457 aa	Known RBP	13.14	□□□□□ -0.31
CHD2-223	ENST00000636306	IRX3	P78415	501 aa	Predicted RBP	13.14	□□□□□ -0.31
CHD2-223	ENST00000636306	GNAI1	P63096	354 aa		13.13	□□□□□ -0.31
CHD2-223	ENST00000636306	IRX5	P78411	483 aa	Predicted RBP	13.13	□□□□□ -0.31
CHD2-223	ENST00000636306	ALDH1L2	Q3SY69	923 aa		13.13	□□□□□ -0.31
CHD2-223	ENST00000636306	PLPPR3	Q6T4P5	718 aa		13.13	□□□□□ -0.31
CHD2-223	ENST00000636306	SMC4	Q9NTJ3	1288 aa		13.13	□□□□□ -0.31
CHD2-223	ENST00000636306	IPO8	O15397	1037 aa	Known RBP	13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	HAP1	P54257	671 aa	Predicted RBP	13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	ANKRD7	Q92527	254 aa		13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	ARHGEF10	O15013	1369 aa		13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	PEAK1	Q9H792	1746 aa		13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	NGDN	Q8NEJ9	315 aa	Known RBP	13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	PIBF1	Q8WXW3	757 aa		13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	IFT57	Q9NWB7	429 aa		13.12	□□□□□ -0.31
CHD2-223	ENST00000636306	SBNO1	A3KN83	1393 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	FLT4	P35916	1363 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	NCKAP5L	Q9HCH0	1330 aa		13.11	□□□□□ -0.31

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