RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 CCAR1Q8IX12 1150 aaKnown RBP11.21□□□□□ -0.61
HDAC9-229ENST00000622668 ST5P78524 1137 aa11.21□□□□□ -0.62
HDAC9-229ENST00000622668 RBM6P78332 1123 aaKnown RBP11.21□□□□□ -0.62
HDAC9-229ENST00000622668 GRM1Q13255 1194 aa11.21□□□□□ -0.62
HDAC9-229ENST00000622668 DCAF5Q96JK2 942 aa11.21□□□□□ -0.62
HDAC9-229ENST00000622668 GNL3LQ9NVN8 582 aaKnown RBP11.21□□□□□ -0.62
HDAC9-229ENST00000622668 ATP5J2-PTCD1G3V325 749 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 WASHC4Q2M389 1173 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 HSP90AB4PQ58FF6 505 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 ABCA9Q8IUA7 1624 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 AKAP4Q5JQC9 854 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 NSD2O96028 1365 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 GNL2Q13823 731 aaKnown RBP11.2□□□□□ -0.62
HDAC9-229ENST00000622668 TESK2Q96S53 571 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 ABCC3O15438 1527 aa11.2□□□□□ -0.62
HDAC9-229ENST00000622668 PIK3R4Q99570 1358 aa11.19□□□□□ -0.62
HDAC9-229ENST00000622668 DHX16O60231 1041 aaKnown RBP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 CHAF1AQ13111 956 aaPredicted RBP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 VPS53Q5VIR6 699 aa11.19□□□□□ -0.62
HDAC9-229ENST00000622668 DBF4Q9UBU7 674 aaPredicted RBP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 DDX46Q7L014 1031 aaKnown RBP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 ZSCAN29Q8IWY8 852 aaPredicted RBP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 CLEC11AQ9Y240 323 aa11.19□□□□□ -0.62
HDAC9-229ENST00000622668 NIP7Q9Y221 180 aaKnown RBP eCLIP11.19□□□□□ -0.62
HDAC9-229ENST00000622668 JCADQ9P266 1359 aa11.19□□□□□ -0.62
HDAC9-229ENST00000622668 CLASRPQ8N2M8 674 aaKnown RBP11.18□□□□□ -0.62
HDAC9-229ENST00000622668 PUS7Q96PZ0 661 aaKnown RBP11.18□□□□□ -0.62
HDAC9-229ENST00000622668 TTLL12Q14166 644 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-229ENST00000622668 MSL1Q68DK7 614 aa11.18□□□□□ -0.62
HDAC9-229ENST00000622668 SPINK5Q9NQ38 1064 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-229ENST00000622668 CEP126Q9P2H0 1117 aa11.18□□□□□ -0.62
HDAC9-229ENST00000622668 PPP1R42Q7Z4L9 355 aa11.18□□□□□ -0.62
HDAC9-229ENST00000622668 C16orf71Q8IYS4 520 aaPredicted RBP11.18□□□□□ -0.62
HDAC9-229ENST00000622668 PANK1Q8TE04 598 aa11.18□□□□□ -0.62
HDAC9-229ENST00000622668 DIAPH3Q9NSV4 1193 aa11.18□□□□□ -0.62
HDAC9-229ENST00000622668 MTHFSDQ2M296 383 aaKnown RBP11.17□□□□□ -0.62
HDAC9-229ENST00000622668 CARD14Q9BXL6 1004 aa11.17□□□□□ -0.62
HDAC9-229ENST00000622668 SLC4A3P48751 1232 aa11.17□□□□□ -0.62
HDAC9-229ENST00000622668 MTMR7Q9Y216 660 aa11.17□□□□□ -0.62
HDAC9-229ENST00000622668 DZIP3Q86Y13 1208 aaKnown RBP11.17□□□□□ -0.62
HDAC9-229ENST00000622668 FBXO41Q8TF61 875 aa11.17□□□□□ -0.62
HDAC9-229ENST00000622668 CLSTN1O94985 981 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 TMOD2Q9NZR1 351 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 PRDM15P57071 1507 aaPredicted RBP11.16□□□□□ -0.62
HDAC9-229ENST00000622668 BECN1Q14457 450 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 TPTE2Q6XPS3 522 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 NLRP3Q96P20 1036 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 C1orf115Q9H7X2 142 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 ABCF2Q9UG63 623 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 SHROOM2Q13796 1616 aa11.16□□□□□ -0.62
HDAC9-229ENST00000622668 PIK3C2GO75747 1445 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 DNAJC2Q99543 621 aaKnown RBP11.15□□□□□ -0.62
HDAC9-229ENST00000622668 METTL24Q5JXM2 366 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 WDR63Q8IWG1 891 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 JARID2Q92833 1246 aaPredicted RBP11.15□□□□□ -0.62
HDAC9-229ENST00000622668 HYPKQ9NX55 129 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 NOB1Q9ULX3 412 aaKnown RBP11.15□□□□□ -0.62
HDAC9-229ENST00000622668 SPATA31A3Q5VYP0 1347 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 ZBED9Q6R2W3 1325 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 GNAI2P04899 355 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 CFAP44Q96MT7 982 aa11.15□□□□□ -0.62
HDAC9-229ENST00000622668 IKQ13123 557 aaPredicted RBP11.15□□□□□ -0.63
HDAC9-229ENST00000622668 CCDC158Q5M9N0 1113 aa11.15□□□□□ -0.63
HDAC9-229ENST00000622668 ARHGAP31Q2M1Z3 1444 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 ADGRL3Q9HAR2 1447 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 CCT4P50991 539 aaKnown RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 IFIT5Q13325 482 aaKnown RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 ZRSR1Q15695 479 aaKnown RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 SRGAP3O43295 1099 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 CCDC184Q52MB2 194 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 COPS6Q7L5N1 327 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 F6X3S4 739 aa11.14□□□□□ -0.63
HDAC9-229ENST00000622668 NCLP19338 710 aaKnown RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 AMER1Q5JTC6 1135 aaPredicted RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 ATF5Q9Y2D1 282 aaPredicted RBP11.14□□□□□ -0.63
HDAC9-229ENST00000622668 KCNQ4P56696 695 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 ATP2B2Q01814 1243 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 ANKRD13DQ6ZTN6 518 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 JDP2Q8WYK2 163 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 TTC39AQ5SRH9 613 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 NOL8Q76FK4 1167 aaKnown RBP11.13□□□□□ -0.63
HDAC9-229ENST00000622668 XAGE3Q8WTP9 111 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 CRBNQ96SW2 442 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 EDC4Q6P2E9 1401 aaKnown RBP11.13□□□□□ -0.63
HDAC9-229ENST00000622668 GJD4Q96KN9 370 aaPredicted RBP11.13□□□□□ -0.63
HDAC9-229ENST00000622668 RALGAPBQ86X10 1494 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 PRR36Q9H6K5 1346 aa11.13□□□□□ -0.63
HDAC9-229ENST00000622668 UBE3BQ7Z3V4 1068 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 CCDC24Q8N4L8 307 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 IFT57Q9NWB7 429 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 MARCH6O60337 910 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 BCS1LQ9Y276 419 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 MAP3K4Q9Y6R4 1608 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 CDC5LQ99459 802 aaKnown RBP11.12□□□□□ -0.63
HDAC9-229ENST00000622668 CARD10Q9BWT7 1032 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 RAI14Q9P0K7 980 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 SBNO1A3KN83 1393 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 PI4KAP2A4QPH2 592 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 ERC2O15083 957 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms