RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 ZRANB1Q9UGI0 708 aa24.11■■□□□ 1.45
PDLIM3-212ENST00000620787 SDSP20132 328 aa24.11■■□□□ 1.45
PDLIM3-212ENST00000620787 MON2Q7Z3U7 1717 aa24.11■■□□□ 1.45
PDLIM3-212ENST00000620787 CWC22Q9HCG8 908 aaKnown RBP24.1■■□□□ 1.45
PDLIM3-212ENST00000620787 FBXO31Q5XUX0 539 aaPredicted RBP24.1■■□□□ 1.45
PDLIM3-212ENST00000620787 CEP85Q6P2H3 762 aa24.1■■□□□ 1.45
PDLIM3-212ENST00000620787 RPAP2Q8IXW5 612 aaPredicted RBP24.09■■□□□ 1.45
PDLIM3-212ENST00000620787 MSH6P52701 1360 aa24.08■■□□□ 1.45
PDLIM3-212ENST00000620787 NCLP19338 710 aaKnown RBP24.08■■□□□ 1.44
PDLIM3-212ENST00000620787 KIAA1211Q6ZU35 1233 aa24.08■■□□□ 1.44
PDLIM3-212ENST00000620787 ZGPATQ8N5A5 531 aaKnown RBP24.08■■□□□ 1.44
PDLIM3-212ENST00000620787 NRKQ7Z2Y5 1582 aa24.08■■□□□ 1.44
PDLIM3-212ENST00000620787 CPS1P31327 1500 aa24.08■■□□□ 1.44
PDLIM3-212ENST00000620787 RTL1A6NKG5 1358 aa24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 SMARCA5O60264 1052 aaPredicted RBP24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 ST18O60284 1047 aa24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 OFD1O75665 1012 aa24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 RBSNQ9H1K0 784 aa24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 ZDHHC9Q9Y397 364 aa24.07■■□□□ 1.44
PDLIM3-212ENST00000620787 RRS1Q15050 365 aaKnown RBP24.06■■□□□ 1.44
PDLIM3-212ENST00000620787 CASC1Q6TDU7 716 aa24.06■■□□□ 1.44
PDLIM3-212ENST00000620787 C3P01024 1663 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 AKAP12Q02952 1782 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 GPT2Q8TD30 523 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 MSNP26038 577 aaKnown RBP24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 KRT24Q2M2I5 525 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 HS1BP3Q53T59 392 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 PDLIM2Q96JY6 352 aa24.05■■□□□ 1.44
PDLIM3-212ENST00000620787 PRPF40AO75400 957 aaKnown RBP24.03■■□□□ 1.44
PDLIM3-212ENST00000620787 PRIM1P49642 420 aaKnown RBP24.03■■□□□ 1.44
PDLIM3-212ENST00000620787 REC8O95072 547 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 COG3Q96JB2 828 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 TUBGCP6Q96RT7 1819 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 APBB1O00213 710 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 WASLO00401 505 aaPredicted RBP24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 MEIS3Q99687 375 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 RBM27Q9P2N5 1060 aaKnown RBP24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 STAG3Q9UJ98 1225 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 ITSN1Q15811 1721 aa24.02■■□□□ 1.44
PDLIM3-212ENST00000620787 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.01■■□□□ 1.43
PDLIM3-212ENST00000620787 KIAA0232Q92628 1395 aa24■■□□□ 1.43
PDLIM3-212ENST00000620787 CHL1O00533 1208 aa24■■□□□ 1.43
PDLIM3-212ENST00000620787 ERC2O15083 957 aa24■■□□□ 1.43
PDLIM3-212ENST00000620787 A2ML1A8K2U0 1454 aa24■■□□□ 1.43
PDLIM3-212ENST00000620787 PTPRCP08575 1304 aa24■■□□□ 1.43
PDLIM3-212ENST00000620787 HAP1P54257 671 aaPredicted RBP24■■□□□ 1.43
PDLIM3-212ENST00000620787 NOL7Q9UMY1 257 aaKnown RBP23.99■■□□□ 1.43
PDLIM3-212ENST00000620787 AEBP1Q8IUX7 1158 aa23.99■■□□□ 1.43
PDLIM3-212ENST00000620787 VSIG10Q8N0Z9 540 aa23.99■■□□□ 1.43
PDLIM3-212ENST00000620787 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.99■■□□□ 1.43
PDLIM3-212ENST00000620787 NRXN3Q9Y4C0 1643 aa23.98■■□□□ 1.43
PDLIM3-212ENST00000620787 TERF1P54274 439 aa23.97■■□□□ 1.43
PDLIM3-212ENST00000620787 CHAMP1Q96JM3 812 aa23.97■■□□□ 1.43
PDLIM3-212ENST00000620787 TMEM63CQ9P1W3 806 aa23.97■■□□□ 1.43
PDLIM3-212ENST00000620787 OSBPL3Q9H4L5 887 aa23.96■■□□□ 1.43
PDLIM3-212ENST00000620787 ZNF500O60304 480 aaPredicted RBP23.96■■□□□ 1.43
PDLIM3-212ENST00000620787 LRSAM1Q6UWE0 723 aa23.96■■□□□ 1.43
PDLIM3-212ENST00000620787 NUDT16Q96DE0 195 aaKnown RBP23.96■■□□□ 1.43
PDLIM3-212ENST00000620787 NCKAP5LQ9HCH0 1330 aa23.96■■□□□ 1.43
PDLIM3-212ENST00000620787 NSFL1CQ9UNZ2 370 aaKnown RBP23.95■■□□□ 1.42
PDLIM3-212ENST00000620787 EIF4A2Q14240 407 aaKnown RBP23.94■■□□□ 1.42
PDLIM3-212ENST00000620787 SULT6B1Q6IMI4 303 aa23.94■■□□□ 1.42
PDLIM3-212ENST00000620787 MCM10Q7L590 875 aa23.94■■□□□ 1.42
PDLIM3-212ENST00000620787 PDCL3Q9H2J4 239 aa23.94■■□□□ 1.42
PDLIM3-212ENST00000620787 PDE1AP54750 535 aa23.94■■□□□ 1.42
PDLIM3-212ENST00000620787 RGPD1P0DJD0 1748 aa23.93■■□□□ 1.42
PDLIM3-212ENST00000620787 HMMRO75330 724 aa23.93■■□□□ 1.42
PDLIM3-212ENST00000620787 TMX3Q96JJ7 454 aa23.93■■□□□ 1.42
PDLIM3-212ENST00000620787 SYCE3A1L190 88 aa23.92■■□□□ 1.42
PDLIM3-212ENST00000620787 NEK4P51957 841 aa23.91■■□□□ 1.42
PDLIM3-212ENST00000620787 CRB1P82279 1406 aa23.91■■□□□ 1.42
PDLIM3-212ENST00000620787 SPATA31D1Q6ZQQ2 1576 aa23.91■■□□□ 1.42
PDLIM3-212ENST00000620787 CCDC61Q9Y6R9 512 aa23.91■■□□□ 1.42
PDLIM3-212ENST00000620787 ZMYND15Q9H091 742 aa23.91■■□□□ 1.42
PDLIM3-212ENST00000620787 SLC4A2P04920 1241 aa23.9■■□□□ 1.42
PDLIM3-212ENST00000620787 ZKSCAN5Q9Y2L8 839 aa23.9■■□□□ 1.42
PDLIM3-212ENST00000620787 METP08581 1390 aa23.9■■□□□ 1.42
PDLIM3-212ENST00000620787 PEAK1Q9H792 1746 aa23.9■■□□□ 1.42
PDLIM3-212ENST00000620787 FOXD4L5Q5VV16 416 aaPredicted RBP23.89■■□□□ 1.42
PDLIM3-212ENST00000620787 FOXD4L4Q8WXT5 416 aaPredicted RBP23.89■■□□□ 1.42
PDLIM3-212ENST00000620787 SALL3Q9BXA9 1300 aa23.89■■□□□ 1.42
PDLIM3-212ENST00000620787 BRD1O95696 1058 aa23.89■■□□□ 1.41
PDLIM3-212ENST00000620787 MBD3O95983 291 aa23.89■■□□□ 1.41
PDLIM3-212ENST00000620787 R3HCC1Q9Y3T6 440 aaKnown RBP23.89■■□□□ 1.41
PDLIM3-212ENST00000620787 XPCQ01831 940 aaPredicted RBP23.88■■□□□ 1.41
PDLIM3-212ENST00000620787 CUL4AQ13619 759 aa23.88■■□□□ 1.41
PDLIM3-212ENST00000620787 TXNDC2Q86VQ3 553 aa23.88■■□□□ 1.41
PDLIM3-212ENST00000620787 MCM2P49736 904 aa23.87■■□□□ 1.41
PDLIM3-212ENST00000620787 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.87■■□□□ 1.41
PDLIM3-212ENST00000620787 ESYT1Q9BSJ8 1104 aa23.87■■□□□ 1.41
PDLIM3-212ENST00000620787 G2E3Q7L622 706 aa23.87■■□□□ 1.41
PDLIM3-212ENST00000620787 NALCNQ8IZF0 1738 aa23.86■■□□□ 1.41
PDLIM3-212ENST00000620787 MCM5P33992 734 aa23.86■■□□□ 1.41
PDLIM3-212ENST00000620787 PKNOX2Q96KN3 472 aa23.86■■□□□ 1.41
PDLIM3-212ENST00000620787 PALD1Q9ULE6 856 aa23.86■■□□□ 1.41
PDLIM3-212ENST00000620787 PRR36Q9H6K5 1346 aa23.86■■□□□ 1.41
PDLIM3-212ENST00000620787 F6X3S4 739 aa23.85■■□□□ 1.41
PDLIM3-212ENST00000620787 TSHZ3Q63HK5 1081 aa23.85■■□□□ 1.41
PDLIM3-212ENST00000620787 CCT4P50991 539 aaKnown RBP23.85■■□□□ 1.41
PDLIM3-212ENST00000620787 CCDC39Q9UFE4 941 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms