RNA–Protein interactions for RNA: ENST00000618944.4

TP53-223, Transcript of tumor protein p53, human

TSL 1 (best) BASIC

Gene TP53, Length 2,404 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TP53-223	ENST00000618944	G2E3	Q7L622	706 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	PLEKHM2	Q8IWE5	1019 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	MEIS3	Q99687	375 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	CHMP5	Q9NZZ3	219 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	TBX22	Q9Y458	520 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944		F6X3S4	739 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	GSPT1	P15170	499 aa	Known RBP	13.96	□□□□□ -0.17
TP53-223	ENST00000618944	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.96	□□□□□ -0.17
TP53-223	ENST00000618944	LTV1	Q96GA3	475 aa	Predicted RBP	13.96	□□□□□ -0.17
TP53-223	ENST00000618944	RBM42	Q9BTD8	480 aa	Known RBP	13.96	□□□□□ -0.17
TP53-223	ENST00000618944	AKAP12	Q02952	1782 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	USP31	Q70CQ4	1352 aa		13.96	□□□□□ -0.17
TP53-223	ENST00000618944	ITSN1	Q15811	1721 aa		13.96	□□□□□ -0.18
TP53-223	ENST00000618944	HAP1	P54257	671 aa	Predicted RBP	13.95	□□□□□ -0.18
TP53-223	ENST00000618944	FOXD4L1	Q9NU39	408 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	MCM4	P33991	863 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	CEP85	Q6P2H3	762 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	ANKRD44	Q8N8A2	993 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	NECTIN2	Q92692	538 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	ARX	Q96QS3	562 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	KIF2C	Q99661	725 aa		13.95	□□□□□ -0.18
TP53-223	ENST00000618944	CRB1	P82279	1406 aa		13.94	□□□□□ -0.18
TP53-223	ENST00000618944	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.94	□□□□□ -0.18
TP53-223	ENST00000618944	TTC21A	Q8NDW8	1320 aa		13.94	□□□□□ -0.18
TP53-223	ENST00000618944	GZF1	Q9H116	711 aa	Predicted RBP	13.94	□□□□□ -0.18
TP53-223	ENST00000618944	SSH2	Q76I76	1423 aa		13.94	□□□□□ -0.18
TP53-223	ENST00000618944	HSP90AB1	P08238	724 aa	Known RBP	13.94	□□□□□ -0.18
TP53-223	ENST00000618944	C14orf37	Q86TY3	774 aa		13.94	□□□□□ -0.18
TP53-223	ENST00000618944	RBM33	Q96EV2	1170 aa	Known RBP	13.94	□□□□□ -0.18
TP53-223	ENST00000618944	KIAA0232	Q92628	1395 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	CD2BP2	O95400	341 aa	Known RBP	13.93	□□□□□ -0.18
TP53-223	ENST00000618944	KCNA6	P17658	529 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	RGS12	O14924	1447 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	MSH6	P52701	1360 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	PEAK1	Q9H792	1746 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	CDC45	O75419	566 aa		13.93	□□□□□ -0.18
TP53-223	ENST00000618944	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.93	□□□□□ -0.18
TP53-223	ENST00000618944	KIF24	Q5T7B8	1368 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	PTPRC	P08575	1304 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	SNX21	Q969T3	373 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	SBNO1	A3KN83	1393 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	FLT4	P35916	1363 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	ABTB2	Q8N961	1025 aa		13.92	□□□□□ -0.18
TP53-223	ENST00000618944	ARHGEF10	O15013	1369 aa		13.91	□□□□□ -0.18
TP53-223	ENST00000618944	RTL1	A6NKG5	1358 aa		13.91	□□□□□ -0.18
TP53-223	ENST00000618944	HSP90AA1	P07900	732 aa	Known RBP	13.91	□□□□□ -0.18
TP53-223	ENST00000618944	TTC22	Q5TAA0	569 aa		13.91	□□□□□ -0.18
TP53-223	ENST00000618944	GAS2L2	Q8NHY3	880 aa		13.91	□□□□□ -0.18
TP53-223	ENST00000618944	USHBP1	Q8N6Y0	703 aa		13.9	□□□□□ -0.18
TP53-223	ENST00000618944	NRK	Q7Z2Y5	1582 aa		13.9	□□□□□ -0.18
TP53-223	ENST00000618944	PLEKHG5	O94827	1062 aa		13.9	□□□□□ -0.18
TP53-223	ENST00000618944	IGSF1	Q8N6C5	1336 aa		13.89	□□□□□ -0.19
TP53-223	ENST00000618944	HOXC9	P31274	260 aa		13.89	□□□□□ -0.19
TP53-223	ENST00000618944	ATP10D	Q9P241	1426 aa		13.89	□□□□□ -0.19
TP53-223	ENST00000618944	TRAK2	O60296	914 aa		13.89	□□□□□ -0.19
TP53-223	ENST00000618944	SDS	P20132	328 aa		13.89	□□□□□ -0.19
TP53-223	ENST00000618944	ZBTB7C	A1YPR0	619 aa		13.88	□□□□□ -0.19
TP53-223	ENST00000618944	GNAT3	A8MTJ3	354 aa		13.88	□□□□□ -0.19
TP53-223	ENST00000618944	STK31	Q9BXU1	1019 aa		13.88	□□□□□ -0.19
TP53-223	ENST00000618944	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.88	□□□□□ -0.19
TP53-223	ENST00000618944	DDIT3	P35638	169 aa		13.88	□□□□□ -0.19
TP53-223	ENST00000618944	IL17RE	Q8NFR9	667 aa		13.88	□□□□□ -0.19
TP53-223	ENST00000618944	TOPAZ1	Q8N9V7	1692 aa		13.87	□□□□□ -0.19
TP53-223	ENST00000618944	CCT4	P50991	539 aa	Known RBP	13.87	□□□□□ -0.19
TP53-223	ENST00000618944	FKBP5	Q13451	457 aa	Predicted RBP	13.87	□□□□□ -0.19
TP53-223	ENST00000618944	KDR	P35968	1356 aa		13.87	□□□□□ -0.19
TP53-223	ENST00000618944		K7ELQ4	463 aa	Predicted RBP	13.86	□□□□□ -0.19
TP53-223	ENST00000618944	TNPO1	Q92973	898 aa	Known RBP	13.86	□□□□□ -0.19
TP53-223	ENST00000618944	FLII	Q13045	1269 aa		13.86	□□□□□ -0.19
TP53-223	ENST00000618944	EXOC6B	Q9Y2D4	811 aa		13.86	□□□□□ -0.19
TP53-223	ENST00000618944	RIMS1	Q86UR5	1692 aa	Known RBP	13.86	□□□□□ -0.19
TP53-223	ENST00000618944	TSHZ3	Q63HK5	1081 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	DIP2A	Q14689	1571 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	HMMR	O75330	724 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	GNAI2	P04899	355 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	CCDC30	Q5VVM6	783 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	USP26	Q9BXU7	913 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	ARHGAP23	Q9P227	1491 aa		13.85	□□□□□ -0.19
TP53-223	ENST00000618944	RGPD1	P0DJD0	1748 aa		13.84	□□□□□ -0.19
TP53-223	ENST00000618944	SLIT1	O75093	1534 aa		13.84	□□□□□ -0.19
TP53-223	ENST00000618944	NCOA3	Q9Y6Q9	1424 aa		13.84	□□□□□ -0.19
TP53-223	ENST00000618944	HTATSF1	O43719	755 aa	Known RBP	13.83	□□□□□ -0.19
TP53-223	ENST00000618944	TRH	P20396	242 aa	Predicted RBP	13.83	□□□□□ -0.19
TP53-223	ENST00000618944	TAF7	Q15545	349 aa	Predicted RBP	13.83	□□□□□ -0.19
TP53-223	ENST00000618944	RGPD8	O14715	1765 aa	Predicted RBP	13.83	□□□□□ -0.2
TP53-223	ENST00000618944	NALCN	Q8IZF0	1738 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	PNMA6E	A0A0J9YXQ4	647 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	GOLGA6L3	A6NEY3	463 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	L1TD1	Q5T7N2	865 aa	Known RBP	13.82	□□□□□ -0.2
TP53-223	ENST00000618944	CASC1	Q6TDU7	716 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	PHF8	Q9UPP1	1060 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	DDX11L8	A8MPP1	907 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	EIF2S2	P20042	333 aa	Known RBP	13.82	□□□□□ -0.2
TP53-223	ENST00000618944	PDE1A	P54750	535 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	RAB3GAP1	Q15042	981 aa		13.82	□□□□□ -0.2
TP53-223	ENST00000618944	PHAX	Q9H814	394 aa	Known RBP	13.81	□□□□□ -0.2
TP53-223	ENST00000618944	XRCC6	P12956	609 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
TP53-223	ENST00000618944	SSFA2	P28290	1259 aa		13.81	□□□□□ -0.2
TP53-223	ENST00000618944	PSME1	Q06323	249 aa		13.81	□□□□□ -0.2
TP53-223	ENST00000618944	ESCO1	Q5FWF5	840 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms