RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TERF2Q15554 542 aa12.48□□□□□ -0.41
VPS39-214ENST00000614932 CFAP53Q96M91 514 aa12.48□□□□□ -0.41
VPS39-214ENST00000614932 ARHGEF28Q8N1W1 1705 aaKnown RBP12.48□□□□□ -0.41
VPS39-214ENST00000614932 TMEM131LA2VDJ0 1609 aa12.48□□□□□ -0.41
VPS39-214ENST00000614932 PRR29P0C7W0 189 aa12.47□□□□□ -0.41
VPS39-214ENST00000614932 FYB1O15117 783 aa12.47□□□□□ -0.41
VPS39-214ENST00000614932 IGHDP01880 384 aa12.47□□□□□ -0.41
VPS39-214ENST00000614932 CARD10Q9BWT7 1032 aa12.47□□□□□ -0.41
VPS39-214ENST00000614932 CLTCQ00610 1675 aaKnown RBP12.47□□□□□ -0.41
VPS39-214ENST00000614932 POLR3AO14802 1390 aaPredicted RBP12.47□□□□□ -0.41
VPS39-214ENST00000614932 RUNDC1Q96C34 613 aa12.47□□□□□ -0.41
VPS39-214ENST00000614932 ZC3H13Q5T200 1668 aaKnown RBP12.46□□□□□ -0.41
VPS39-214ENST00000614932 LMOD3Q0VAK6 560 aa12.46□□□□□ -0.41
VPS39-214ENST00000614932 TNNQ9UQP3 1299 aa12.46□□□□□ -0.41
VPS39-214ENST00000614932 INSRP06213 1382 aa12.46□□□□□ -0.41
VPS39-214ENST00000614932 MFAP1P55081 439 aaKnown RBP12.46□□□□□ -0.42
VPS39-214ENST00000614932 SMC5Q8IY18 1101 aa12.46□□□□□ -0.42
VPS39-214ENST00000614932 C22orf23Q9BZE7 217 aa12.46□□□□□ -0.42
VPS39-214ENST00000614932 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.42
VPS39-214ENST00000614932 PANK1Q8TE04 598 aa12.45□□□□□ -0.42
VPS39-214ENST00000614932 TERF2IPQ9NYB0 399 aa12.45□□□□□ -0.42
VPS39-214ENST00000614932 PTPRMP28827 1452 aa12.45□□□□□ -0.42
VPS39-214ENST00000614932 BANK1Q8NDB2 785 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 PIBF1Q8WXW3 757 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 TSR2Q969E8 191 aaKnown RBP12.44□□□□□ -0.42
VPS39-214ENST00000614932 CLUAP1Q96AJ1 413 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 RIMS2Q9UQ26 1411 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 ZBTB7CA1YPR0 619 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 ZSCAN23Q3MJ62 389 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 HDGFL2Q7Z4V5 671 aaPredicted RBP12.44□□□□□ -0.42
VPS39-214ENST00000614932 TRMT2AQ8IZ69 625 aaKnown RBP12.44□□□□□ -0.42
VPS39-214ENST00000614932 MYCBPQ99417 103 aaPredicted RBP12.44□□□□□ -0.42
VPS39-214ENST00000614932 COG6Q9Y2V7 657 aa12.44□□□□□ -0.42
VPS39-214ENST00000614932 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS39-214ENST00000614932 PHF14O94880 888 aa12.43□□□□□ -0.42
VPS39-214ENST00000614932 NOLC1Q14978 699 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS39-214ENST00000614932 ALKQ9UM73 1620 aa12.43□□□□□ -0.42
VPS39-214ENST00000614932 GTF2A1P52655 376 aaPredicted RBP12.43□□□□□ -0.42
VPS39-214ENST00000614932 TMED8Q6PL24 325 aaPredicted RBP12.43□□□□□ -0.42
VPS39-214ENST00000614932 NKTRP30414 1462 aaKnown RBP12.43□□□□□ -0.42
VPS39-214ENST00000614932 METP08581 1390 aa12.43□□□□□ -0.42
VPS39-214ENST00000614932 SIRT1Q96EB6 747 aa12.43□□□□□ -0.42
VPS39-214ENST00000614932 A2ML1A8K2U0 1454 aa12.42□□□□□ -0.42
VPS39-214ENST00000614932 NOP2P46087 812 aaKnown RBP12.42□□□□□ -0.42
VPS39-214ENST00000614932 CLEC17AQ6ZS10 378 aa12.42□□□□□ -0.42
VPS39-214ENST00000614932 DIAPH3Q9NSV4 1193 aa12.42□□□□□ -0.42
VPS39-214ENST00000614932 CTNNA3Q9UI47 895 aa12.42□□□□□ -0.42
VPS39-214ENST00000614932 DDX41Q9UJV9 622 aaKnown RBP12.42□□□□□ -0.42
VPS39-214ENST00000614932 MORC2Q9Y6X9 1032 aaPredicted RBP12.42□□□□□ -0.42
VPS39-214ENST00000614932 ZFYVE9O95405 1425 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 ERICH4A6NGS2 130 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 PRIM1P49642 420 aaKnown RBP12.41□□□□□ -0.42
VPS39-214ENST00000614932 CTR9Q6PD62 1173 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 TRERF1Q96PN7 1200 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 SLC26A8Q96RN1 970 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 NCAPGQ9BPX3 1015 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 RSPH14Q9UHP6 348 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 HMOX1P09601 288 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 FKBP5Q13451 457 aaPredicted RBP12.41□□□□□ -0.42
VPS39-214ENST00000614932 EP400NLQ6ZTU2 488 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 NME9Q86XW9 330 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 CREBRFQ8IUR6 639 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 SNX21Q969T3 373 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 SMC4Q9NTJ3 1288 aa12.41□□□□□ -0.42
VPS39-214ENST00000614932 CTIFO43310 598 aaKnown RBP12.4□□□□□ -0.42
VPS39-214ENST00000614932 BRPF1P55201 1214 aaPredicted RBP12.4□□□□□ -0.42
VPS39-214ENST00000614932 CAVIN1Q6NZI2 390 aaKnown RBP12.4□□□□□ -0.42
VPS39-214ENST00000614932 ATAD2Q6PL18 1390 aa12.4□□□□□ -0.42
VPS39-214ENST00000614932 CEP120Q8N960 986 aa12.4□□□□□ -0.42
VPS39-214ENST00000614932 ABCC11Q96J66 1382 aa12.4□□□□□ -0.43
VPS39-214ENST00000614932 SHPRHQ149N8 1683 aa12.4□□□□□ -0.43
VPS39-214ENST00000614932 EGFL6Q8IUX8 553 aa12.39□□□□□ -0.43
VPS39-214ENST00000614932 CHAF1AQ13111 956 aaPredicted RBP12.39□□□□□ -0.43
VPS39-214ENST00000614932 EMILIN1Q9Y6C2 1016 aa12.39□□□□□ -0.43
VPS39-214ENST00000614932 CD163L1Q9NR16 1453 aa12.39□□□□□ -0.43
VPS39-214ENST00000614932 DHX16O60231 1041 aaKnown RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 SPTLC3Q9NUV7 552 aa12.38□□□□□ -0.43
VPS39-214ENST00000614932 CEP83Q9Y592 693 aa12.38□□□□□ -0.43
VPS39-214ENST00000614932 RIOK3O14730 519 aaKnown RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 TRHP20396 242 aaPredicted RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 RRS1Q15050 365 aaKnown RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 CT47A1Q5JQC4 288 aaPredicted RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 DIAPH1O60610 1272 aaKnown RBP12.38□□□□□ -0.43
VPS39-214ENST00000614932 RAD51AP2Q09MP3 1159 aa12.38□□□□□ -0.43
VPS39-214ENST00000614932 BAG4O95429 457 aaKnown RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 RLBP1P12271 317 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 MCCP23508 829 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 RARSP54136 660 aaKnown RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 ICE2Q659A1 982 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 KRT222Q8N1A0 295 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 PUS7Q96PZ0 661 aaKnown RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 RASSF4Q9H2L5 321 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 WASLO00401 505 aaPredicted RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 SYCP1Q15431 976 aa12.37□□□□□ -0.43
VPS39-214ENST00000614932 NUDT16Q96DE0 195 aaKnown RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 THUMPD2Q9BTF0 503 aaKnown RBP12.37□□□□□ -0.43
VPS39-214ENST00000614932 CCDC172P0C7W6 258 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 LTKP29376 864 aa12.36□□□□□ -0.43
VPS39-214ENST00000614932 TMPOP42166 694 aaKnown RBP12.36□□□□□ -0.43
VPS39-214ENST00000614932 HNRNPH2P55795 449 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms