RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZNF827Q17R98 1081 aa12.32□□□□□ -0.44
SHKBP1-220ENST00000599716 ZNF526Q8TF50 670 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-220ENST00000599716 ABCC6O95255 1503 aa12.32□□□□□ -0.44
SHKBP1-220ENST00000599716 USP31Q70CQ4 1352 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 PAPPAQ13219 1627 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 KIF3CO14782 793 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 IL2RBP14784 551 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 KLHL34Q8N239 644 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 KLRG1Q96E93 195 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 LRRC4BQ9NT99 713 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 USP54Q70EL1 1684 aa12.31□□□□□ -0.44
SHKBP1-220ENST00000599716 A0A1W2PP64 1363 aa12.3□□□□□ -0.44
SHKBP1-220ENST00000599716 DDX54Q8TDD1 881 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-220ENST00000599716 RGPD2P0DJD1 1756 aa12.29□□□□□ -0.44
SHKBP1-220ENST00000599716 NLGN2Q8NFZ4 835 aa12.29□□□□□ -0.44
SHKBP1-220ENST00000599716 POLD1P28340 1107 aa12.28□□□□□ -0.44
SHKBP1-220ENST00000599716 HDGFL2Q7Z4V5 671 aaPredicted RBP12.28□□□□□ -0.44
SHKBP1-220ENST00000599716 SYTL4Q96C24 671 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-220ENST00000599716 TUBGCP6Q96RT7 1819 aa12.27□□□□□ -0.45
SHKBP1-220ENST00000599716 EDC4Q6P2E9 1401 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-220ENST00000599716 DOT1LQ8TEK3 1739 aa12.26□□□□□ -0.45
SHKBP1-220ENST00000599716 TOMM70O94826 608 aa12.26□□□□□ -0.45
SHKBP1-220ENST00000599716 PRIM1P49642 420 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-220ENST00000599716 CACNB1Q02641 598 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-220ENST00000599716 USHBP1Q8N6Y0 703 aa12.25□□□□□ -0.45
SHKBP1-220ENST00000599716 MAP3K19Q56UN5 1328 aa12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 SLC16A10Q8TF71 515 aa12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 IP6K1Q92551 441 aa12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 AKT1S1Q96B36 256 aa12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 TERF2IPQ9NYB0 399 aa12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 FAM208AQ9UK61 1670 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-220ENST00000599716 MEGF6O75095 1541 aa12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 TONSLQ96HA7 1378 aa12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 PNPLA7Q6ZV29 1317 aa12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 ST20-MTHFSA0A0A6YYL1 179 aa12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 RRS1Q15050 365 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 TESK2Q96S53 571 aa12.23□□□□□ -0.45
SHKBP1-220ENST00000599716 NSD2O96028 1365 aa12.22□□□□□ -0.45
SHKBP1-220ENST00000599716 HOXC9P31274 260 aa12.22□□□□□ -0.45
SHKBP1-220ENST00000599716 WDR90Q96KV7 1748 aa12.22□□□□□ -0.45
SHKBP1-220ENST00000599716 AMPHP49418 695 aa12.21□□□□□ -0.45
SHKBP1-220ENST00000599716 COG3Q96JB2 828 aa12.21□□□□□ -0.45
SHKBP1-220ENST00000599716 TFCP2L1Q9NZI6 479 aa12.21□□□□□ -0.45
SHKBP1-220ENST00000599716 MSL1Q68DK7 614 aa12.2□□□□□ -0.46
SHKBP1-220ENST00000599716 GGNBP2Q9H3C7 697 aa12.2□□□□□ -0.46
SHKBP1-220ENST00000599716 ANKRD36BQ8N2N9 1353 aa12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 NBPF6Q5VWK0 638 aa12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 SMIM5Q71RC9 77 aa12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 ZCRB1Q8TBF4 217 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 NBPF4Q96M43 638 aa12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 LY75O60449 1722 aa12.19□□□□□ -0.46
SHKBP1-220ENST00000599716 QSER1Q2KHR3 1735 aa12.18□□□□□ -0.46
SHKBP1-220ENST00000599716 HTRA3P83110 453 aa12.18□□□□□ -0.46
SHKBP1-220ENST00000599716 SLC27A3Q5K4L6 730 aa12.18□□□□□ -0.46
SHKBP1-220ENST00000599716 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-220ENST00000599716 HSPA1AP0DMV8 641 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-220ENST00000599716 HSPA1BP0DMV9 641 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-220ENST00000599716 COL23A1Q86Y22 540 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-220ENST00000599716 COL24A1Q17RW2 1714 aa12.17□□□□□ -0.46
SHKBP1-220ENST00000599716 FYB1O15117 783 aa12.16□□□□□ -0.46
SHKBP1-220ENST00000599716 HSP90AB2PQ58FF8 381 aa12.16□□□□□ -0.46
SHKBP1-220ENST00000599716 RBM46Q8TBY0 533 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-220ENST00000599716 FAM161AQ3B820 660 aa12.15□□□□□ -0.46
SHKBP1-220ENST00000599716 AMIGO3Q86WK7 504 aa12.14□□□□□ -0.47
SHKBP1-220ENST00000599716 PUS7Q96PZ0 661 aaKnown RBP12.14□□□□□ -0.47
SHKBP1-220ENST00000599716 USP47Q96K76 1375 aa12.14□□□□□ -0.47
SHKBP1-220ENST00000599716 TOGARAM1Q9Y4F4 1720 aa12.14□□□□□ -0.47
SHKBP1-220ENST00000599716 C5P01031 1676 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 FSTL1Q12841 308 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 MPRIPQ6WCQ1 1025 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 RAPGEF4Q8WZA2 1011 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 EMILIN1Q9Y6C2 1016 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 KIF20BQ96Q89 1820 aa12.13□□□□□ -0.47
SHKBP1-220ENST00000599716 RTL1A6NKG5 1358 aa12.12□□□□□ -0.47
SHKBP1-220ENST00000599716 CYP27B1O15528 508 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 TATP17735 454 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 CARD14Q9BXL6 1004 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 CD2APQ9Y5K6 639 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 PDE4DIPQ5VU43 2346 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 ITGB4P16144 1822 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 TAF1LQ8IZX4 1826 aa12.11□□□□□ -0.47
SHKBP1-220ENST00000599716 PALLDQ8WX93 1383 aa12.1□□□□□ -0.47
SHKBP1-220ENST00000599716 PPM1GO15355 546 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-220ENST00000599716 PHF14O94880 888 aa12.1□□□□□ -0.47
SHKBP1-220ENST00000599716 SMG6Q86US8 1419 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-220ENST00000599716 TMF1P82094 1093 aa12.09□□□□□ -0.47
SHKBP1-220ENST00000599716 INSRP06213 1382 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 FLT4P35916 1363 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 NMRK2Q9NPI5 230 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 NSD3Q9BZ95 1437 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 C4BP0C0L5 1744 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 PCDH11XQ9BZA7 1347 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 PCDH11YQ9BZA8 1340 aa12.08□□□□□ -0.48
SHKBP1-220ENST00000599716 C16orf71Q8IYS4 520 aaPredicted RBP12.07□□□□□ -0.48
SHKBP1-220ENST00000599716 PIGBQ92521 554 aa12.07□□□□□ -0.48
SHKBP1-220ENST00000599716 PKD1L3Q7Z443 1732 aa12.06□□□□□ -0.48
SHKBP1-220ENST00000599716 POLR3GLQ9BT43 218 aa12.06□□□□□ -0.48
SHKBP1-220ENST00000599716 CGNL1Q0VF96 1302 aa12.06□□□□□ -0.48
SHKBP1-220ENST00000599716 UBR3Q6ZT12 1888 aa12.06□□□□□ -0.48
SHKBP1-220ENST00000599716 TNNT2P45379 298 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms