RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CARD10Q9BWT7 1032 aa16.53■□□□□ 0.24
SHKBP1-213ENST00000597325 TOMM70O94826 608 aa16.52■□□□□ 0.24
SHKBP1-213ENST00000597325 ABCC6O95255 1503 aa16.51■□□□□ 0.23
SHKBP1-213ENST00000597325 CCDC61Q9Y6R9 512 aa16.51■□□□□ 0.23
SHKBP1-213ENST00000597325 ZBTB7CA1YPR0 619 aa16.5■□□□□ 0.23
SHKBP1-213ENST00000597325 RGPD5Q99666 1765 aa16.5■□□□□ 0.23
SHKBP1-213ENST00000597325 ANKRD36BQ8N2N9 1353 aa16.5■□□□□ 0.23
SHKBP1-213ENST00000597325 SLC27A3Q5K4L6 730 aa16.49■□□□□ 0.23
SHKBP1-213ENST00000597325 DIEXFQ68CQ4 756 aaKnown RBP16.49■□□□□ 0.23
SHKBP1-213ENST00000597325 TERF2IPQ9NYB0 399 aa16.49■□□□□ 0.23
SHKBP1-213ENST00000597325 TFCP2L1Q9NZI6 479 aa16.49■□□□□ 0.23
SHKBP1-213ENST00000597325 PCDH10Q9P2E7 1040 aa16.49■□□□□ 0.23
SHKBP1-213ENST00000597325 HTRA3P83110 453 aa16.48■□□□□ 0.23
SHKBP1-213ENST00000597325 HDGFL2Q7Z4V5 671 aaPredicted RBP16.48■□□□□ 0.23
SHKBP1-213ENST00000597325 SLC12A5Q9H2X9 1139 aa16.48■□□□□ 0.23
SHKBP1-213ENST00000597325 PANK3Q9H999 370 aa16.48■□□□□ 0.23
SHKBP1-213ENST00000597325 CD2APQ9Y5K6 639 aa16.48■□□□□ 0.23
SHKBP1-213ENST00000597325 CPSF1Q10570 1443 aaKnown RBP16.47■□□□□ 0.23
SHKBP1-213ENST00000597325 CABP1Q9NZU7 370 aa16.47■□□□□ 0.23
SHKBP1-213ENST00000597325 A0A1W2PP64 1363 aa16.46■□□□□ 0.23
SHKBP1-213ENST00000597325 ARHGEF25Q86VW2 580 aa16.45■□□□□ 0.22
SHKBP1-213ENST00000597325 CD163L1Q9NR16 1453 aa16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 NLRP6P59044 892 aa16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 WWC3Q9ULE0 1092 aa16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 MON2Q7Z3U7 1717 aa16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 CICQ96RK0 1608 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 NSD3Q9BZ95 1437 aa16.44■□□□□ 0.22
SHKBP1-213ENST00000597325 KTN1Q86UP2 1357 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-213ENST00000597325 KAT6BQ8WYB5 2073 aa16.43■□□□□ 0.22
SHKBP1-213ENST00000597325 KCNQ4P56696 695 aa16.43■□□□□ 0.22
SHKBP1-213ENST00000597325 KNSTRNQ9Y448 316 aa16.43■□□□□ 0.22
SHKBP1-213ENST00000597325 PIK3C2AO00443 1686 aa16.43■□□□□ 0.22
SHKBP1-213ENST00000597325 COL23A1Q86Y22 540 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-213ENST00000597325 LY75O60449 1722 aa16.42■□□□□ 0.22
SHKBP1-213ENST00000597325 ZNF692Q9BU19 519 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-213ENST00000597325 EDC4Q6P2E9 1401 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-213ENST00000597325 CSB-PGBD3P0DP91 1061 aa16.4■□□□□ 0.22
SHKBP1-213ENST00000597325 MSL1Q68DK7 614 aa16.4■□□□□ 0.22
SHKBP1-213ENST00000597325 RBM46Q8TBY0 533 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-213ENST00000597325 NMRK2Q9NPI5 230 aa16.39■□□□□ 0.21
SHKBP1-213ENST00000597325 CGNL1Q0VF96 1302 aa16.39■□□□□ 0.21
SHKBP1-213ENST00000597325 IGSF1Q8N6C5 1336 aa16.39■□□□□ 0.21
SHKBP1-213ENST00000597325 KIF20BQ96Q89 1820 aa16.38■□□□□ 0.21
SHKBP1-213ENST00000597325 ANP32CO43423 234 aa16.38■□□□□ 0.21
SHKBP1-213ENST00000597325 CARD14Q9BXL6 1004 aa16.38■□□□□ 0.21
SHKBP1-213ENST00000597325 PER1O15534 1290 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-213ENST00000597325 NSD2O96028 1365 aa16.37■□□□□ 0.21
SHKBP1-213ENST00000597325 NPC1L1Q9UHC9 1359 aa16.36■□□□□ 0.21
SHKBP1-213ENST00000597325 NFAT5O94916 1531 aa16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 MSH5O43196 834 aa16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 HSPA1AP0DMV8 641 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 HSPA1BP0DMV9 641 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 IL2RBP14784 551 aa16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 FSTL1Q12841 308 aa16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 CNGB1Q14028 1251 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-213ENST00000597325 ANKRD26Q9UPS8 1709 aa16.34■□□□□ 0.21
SHKBP1-213ENST00000597325 CC2D1BQ5T0F9 858 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-213ENST00000597325 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHKBP1-213ENST00000597325 AMER1Q5JTC6 1135 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-213ENST00000597325 KCNH5Q8NCM2 988 aa16.33■□□□□ 0.2
SHKBP1-213ENST00000597325 TTC21AQ8NDW8 1320 aa16.33■□□□□ 0.2
SHKBP1-213ENST00000597325 ERBB3P21860 1342 aa16.32■□□□□ 0.2
SHKBP1-213ENST00000597325 TTC21BQ7Z4L5 1316 aa16.32■□□□□ 0.2
SHKBP1-213ENST00000597325 USP54Q70EL1 1684 aa16.3■□□□□ 0.2
SHKBP1-213ENST00000597325 RALBP1Q15311 655 aa16.3■□□□□ 0.2
SHKBP1-213ENST00000597325 CCNL1Q9UK58 526 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-213ENST00000597325 PRKRIP1Q9H875 184 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-213ENST00000597325 DOT1LQ8TEK3 1739 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 SOX12O15370 315 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 PRIM1P49642 420 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 MORC1Q86VD1 984 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 NME9Q86XW9 330 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 GGNBP2Q9H3C7 697 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 NLRP2Q9NX02 1062 aa16.28■□□□□ 0.2
SHKBP1-213ENST00000597325 FYB1O15117 783 aa16.27■□□□□ 0.2
SHKBP1-213ENST00000597325 COG3Q96JB2 828 aa16.27■□□□□ 0.2
SHKBP1-213ENST00000597325 C5P01031 1676 aa16.27■□□□□ 0.19
SHKBP1-213ENST00000597325 C10orf71Q711Q0 1435 aa16.27■□□□□ 0.19
SHKBP1-213ENST00000597325 KIAA1551Q9HCM1 1747 aa16.26■□□□□ 0.19
SHKBP1-213ENST00000597325 C16orf71Q8IYS4 520 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-213ENST00000597325 FLAD1Q8NFF5 587 aa16.25■□□□□ 0.19
SHKBP1-213ENST00000597325 SYTL4Q96C24 671 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-213ENST00000597325 TOGARAM1Q9Y4F4 1720 aa16.25■□□□□ 0.19
SHKBP1-213ENST00000597325 TAF1LQ8IZX4 1826 aa16.24■□□□□ 0.19
SHKBP1-213ENST00000597325 MYBBP1AQ9BQG0 1328 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-213ENST00000597325 MIER1Q8N108 512 aa16.24■□□□□ 0.19
SHKBP1-213ENST00000597325 DDX54Q8TDD1 881 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-213ENST00000597325 USP31Q70CQ4 1352 aa16.24■□□□□ 0.19
SHKBP1-213ENST00000597325 AMIGO3Q86WK7 504 aa16.23■□□□□ 0.19
SHKBP1-213ENST00000597325 KIF13BQ9NQT8 1826 aa16.23■□□□□ 0.19
SHKBP1-213ENST00000597325 PXDNLA1KZ92 1463 aa16.22■□□□□ 0.19
SHKBP1-213ENST00000597325 TNNT2P45379 298 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-213ENST00000597325 KCPQ6ZWJ8 1503 aa16.21■□□□□ 0.19
SHKBP1-213ENST00000597325 PKD1L3Q7Z443 1732 aa16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 TNRC18O15417 2968 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 FAM161AQ3B820 660 aa16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 ANKRD24Q8TF21 1146 aa16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 PLEKHG2Q9H7P9 1386 aa16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 UBR3Q6ZT12 1888 aa16.2■□□□□ 0.18
SHKBP1-213ENST00000597325 LTN1O94822 1766 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms