RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 ZNF445P59923 1031 aa18.33■□□□□ 0.52
SMARCA4-219ENST00000592604 RGS12O14924 1447 aa18.32■□□□□ 0.52
SMARCA4-219ENST00000592604 C16orf71Q8IYS4 520 aaPredicted RBP18.32■□□□□ 0.52
SMARCA4-219ENST00000592604 WASLO00401 505 aaPredicted RBP18.32■□□□□ 0.52
SMARCA4-219ENST00000592604 CWC22Q9HCG8 908 aaKnown RBP18.32■□□□□ 0.52
SMARCA4-219ENST00000592604 STAG3Q9UJ98 1225 aa18.32■□□□□ 0.52
SMARCA4-219ENST00000592604 ZRANB1Q9UGI0 708 aa18.31■□□□□ 0.52
SMARCA4-219ENST00000592604 MON2Q7Z3U7 1717 aa18.31■□□□□ 0.52
SMARCA4-219ENST00000592604 CEP85Q6P2H3 762 aa18.3■□□□□ 0.52
SMARCA4-219ENST00000592604 COG3Q96JB2 828 aa18.3■□□□□ 0.52
SMARCA4-219ENST00000592604 A2ML1A8K2U0 1454 aa18.3■□□□□ 0.52
SMARCA4-219ENST00000592604 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 LMBRD1Q9NUN5 540 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 SDSP20132 328 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 CPS1P31327 1500 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 RRP9O43818 475 aaKnown RBP18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 OSCARQ8IYS5 282 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 KIAA0232Q92628 1395 aa18.29■□□□□ 0.52
SMARCA4-219ENST00000592604 RTL1A6NKG5 1358 aa18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 CHL1O00533 1208 aa18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 CASC1Q6TDU7 716 aa18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 OTUD7AQ8TE49 926 aaPredicted RBP18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 ANP32BQ92688 251 aaKnown RBP18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 RRS1Q15050 365 aaKnown RBP18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 MCTP1Q6DN14 999 aa18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 PTPRCP08575 1304 aa18.28■□□□□ 0.52
SMARCA4-219ENST00000592604 ZSCAN30Q86W11 494 aa18.27■□□□□ 0.52
SMARCA4-219ENST00000592604 NRKQ7Z2Y5 1582 aa18.27■□□□□ 0.52
SMARCA4-219ENST00000592604 C3P01024 1663 aa18.27■□□□□ 0.52
SMARCA4-219ENST00000592604 ST18O60284 1047 aa18.27■□□□□ 0.52
SMARCA4-219ENST00000592604 NUDT16Q96DE0 195 aaKnown RBP18.26■□□□□ 0.51
SMARCA4-219ENST00000592604 AKAP12Q02952 1782 aa18.26■□□□□ 0.51
SMARCA4-219ENST00000592604 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
SMARCA4-219ENST00000592604 REC8O95072 547 aa18.26■□□□□ 0.51
SMARCA4-219ENST00000592604 HSP90AA2PQ14568 343 aaPredicted RBP18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 ZSCAN23Q3MJ62 389 aa18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 CCDC61Q9Y6R9 512 aa18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 TPM2P07951 284 aa18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 PKP1Q13835 747 aa18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 MSH6P52701 1360 aa18.25■□□□□ 0.51
SMARCA4-219ENST00000592604 HS1BP3Q53T59 392 aa18.24■□□□□ 0.51
SMARCA4-219ENST00000592604 SIRT1Q96EB6 747 aa18.24■□□□□ 0.51
SMARCA4-219ENST00000592604 OSBPL3Q9H4L5 887 aa18.24■□□□□ 0.51
SMARCA4-219ENST00000592604 SPATA31D1Q6ZQQ2 1576 aa18.24■□□□□ 0.51
SMARCA4-219ENST00000592604 NRXN3Q9Y4C0 1643 aa18.24■□□□□ 0.51
SMARCA4-219ENST00000592604 CAVIN1Q6NZI2 390 aaKnown RBP18.23■□□□□ 0.51
SMARCA4-219ENST00000592604 SMARCA5O60264 1052 aaPredicted RBP18.23■□□□□ 0.51
SMARCA4-219ENST00000592604 KRT24Q2M2I5 525 aa18.23■□□□□ 0.51
SMARCA4-219ENST00000592604 MEIS3Q99687 375 aa18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 ZDHHC9Q9Y397 364 aa18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 ERC2O15083 957 aa18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 ITSN1Q15811 1721 aa18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 AEBP1Q8IUX7 1158 aa18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 ZGPATQ8N5A5 531 aaKnown RBP18.22■□□□□ 0.51
SMARCA4-219ENST00000592604 SULT6B1Q6IMI4 303 aa18.21■□□□□ 0.51
SMARCA4-219ENST00000592604 PDLIM2Q96JY6 352 aa18.21■□□□□ 0.51
SMARCA4-219ENST00000592604 HMMRO75330 724 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 OFD1O75665 1012 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 METP08581 1390 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 AGLP35573 1532 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 NCKAP5LQ9HCH0 1330 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 NCLP19338 710 aaKnown RBP18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 RBSNQ9H1K0 784 aa18.2■□□□□ 0.5
SMARCA4-219ENST00000592604 PRPF40AO75400 957 aaKnown RBP18.19■□□□□ 0.5
SMARCA4-219ENST00000592604 GPT2Q8TD30 523 aa18.19■□□□□ 0.5
SMARCA4-219ENST00000592604 TECPR2O15040 1411 aa18.19■□□□□ 0.5
SMARCA4-219ENST00000592604 TXNDC2Q86VQ3 553 aa18.19■□□□□ 0.5
SMARCA4-219ENST00000592604 CRB1P82279 1406 aa18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 MSNP26038 577 aaKnown RBP18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 PDE1AP54750 535 aa18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 MCM10Q7L590 875 aa18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 PRIM1P49642 420 aaKnown RBP18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 TERF1P54274 439 aa18.18■□□□□ 0.5
SMARCA4-219ENST00000592604 APBB1O00213 710 aa18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 SLC4A2P04920 1241 aa18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 TAF7LQ5H9L4 462 aa18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 RGPD1P0DJD0 1748 aa18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 KIAA1211Q6ZU35 1233 aa18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.17■□□□□ 0.5
SMARCA4-219ENST00000592604 NOL7Q9UMY1 257 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 MCM2P49736 904 aa18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 PRR36Q9H6K5 1346 aa18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 TUBGCP6Q96RT7 1819 aa18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 CCT4P50991 539 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.16■□□□□ 0.5
SMARCA4-219ENST00000592604 LRSAM1Q6UWE0 723 aa18.15■□□□□ 0.5
SMARCA4-219ENST00000592604 SALL3Q9BXA9 1300 aa18.15■□□□□ 0.5
SMARCA4-219ENST00000592604 TMX3Q96JJ7 454 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 OVOS2A0A0J9YW53 1432 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 OVOS2Q6IE36 1432 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 ZNF500O60304 480 aaPredicted RBP18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 CUL4AQ13619 759 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 TMEM63CQ9P1W3 806 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 RBM27Q9P2N5 1060 aaKnown RBP18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 TTC21BQ7Z4L5 1316 aa18.14■□□□□ 0.49
SMARCA4-219ENST00000592604 NEK4P51957 841 aa18.13■□□□□ 0.49
SMARCA4-219ENST00000592604 BRD1O95696 1058 aa18.12■□□□□ 0.49
SMARCA4-219ENST00000592604 MBD3O95983 291 aa18.12■□□□□ 0.49
SMARCA4-219ENST00000592604 IL17RAQ96F46 866 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms