RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 RIPK4P57078 832 aa13.55□□□□□ -0.24
ZNF540-208ENST00000589857 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.55□□□□□ -0.24
ZNF540-208ENST00000589857 FTSJ3Q8IY81 847 aaKnown RBP13.55□□□□□ -0.24
ZNF540-208ENST00000589857 FRAT1Q92837 279 aaPredicted RBP13.55□□□□□ -0.24
ZNF540-208ENST00000589857 DISP2A7MBM2 1401 aa13.55□□□□□ -0.24
ZNF540-208ENST00000589857 APBA3O96018 575 aa13.54□□□□□ -0.24
ZNF540-208ENST00000589857 EVA1CP58658 441 aa13.54□□□□□ -0.24
ZNF540-208ENST00000589857 ALDH1L2Q3SY69 923 aa13.54□□□□□ -0.24
ZNF540-208ENST00000589857 RWDD1Q9H446 243 aaPredicted RBP13.54□□□□□ -0.24
ZNF540-208ENST00000589857 POLKQ9UBT6 870 aa13.54□□□□□ -0.24
ZNF540-208ENST00000589857 BRWD3Q6RI45 1802 aa13.53□□□□□ -0.24
ZNF540-208ENST00000589857 NFE2L2Q16236 605 aa13.53□□□□□ -0.24
ZNF540-208ENST00000589857 PLCH1Q4KWH8 1693 aa13.53□□□□□ -0.24
ZNF540-208ENST00000589857 PLEKHG3A1L390 1219 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 YY1P25490 414 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 EZH2Q15910 746 aaKnown RBP13.52□□□□□ -0.25
ZNF540-208ENST00000589857 DZIP1LQ8IYY4 767 aaKnown RBP13.52□□□□□ -0.25
ZNF540-208ENST00000589857 RSPH6AQ9H0K4 717 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 SMC4Q9NTJ3 1288 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 PPP1R1BQ9UD71 204 aaPredicted RBP13.52□□□□□ -0.25
ZNF540-208ENST00000589857 DDX19BQ9UMR2 479 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 COG6Q9Y2V7 657 aa13.52□□□□□ -0.25
ZNF540-208ENST00000589857 TRIM37O94972 964 aa13.51□□□□□ -0.25
ZNF540-208ENST00000589857 GNAI1P63096 354 aa13.51□□□□□ -0.25
ZNF540-208ENST00000589857 MVPQ14764 893 aaKnown RBP13.51□□□□□ -0.25
ZNF540-208ENST00000589857 DAXXQ9UER7 740 aaPredicted RBP13.51□□□□□ -0.25
ZNF540-208ENST00000589857 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
ZNF540-208ENST00000589857 RGPD1P0DJD0 1748 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 SPATA31A1Q5TZJ5 1347 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 TTC21AQ8NDW8 1320 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 PRKAR2BP31323 418 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 BRPF1P55201 1214 aaPredicted RBP13.5□□□□□ -0.25
ZNF540-208ENST00000589857 PANK1Q8TE04 598 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 CAMKK2Q96RR4 588 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 STRN4Q9NRL3 753 aa13.5□□□□□ -0.25
ZNF540-208ENST00000589857 PPM1GO15355 546 aaPredicted RBP13.49□□□□□ -0.25
ZNF540-208ENST00000589857 IL13P35225 146 aa13.49□□□□□ -0.25
ZNF540-208ENST00000589857 EXOSC9Q06265 439 aaKnown RBP13.49□□□□□ -0.25
ZNF540-208ENST00000589857 FAM182BQ5T319 152 aa13.49□□□□□ -0.25
ZNF540-208ENST00000589857 BARGINQ6ZT62 677 aa13.49□□□□□ -0.25
ZNF540-208ENST00000589857 NPM2Q86SE8 214 aaKnown RBP13.49□□□□□ -0.25
ZNF540-208ENST00000589857 SPON1Q9HCB6 807 aa13.49□□□□□ -0.25
ZNF540-208ENST00000589857 IFT57Q9NWB7 429 aa13.49□□□□□ -0.25
ZNF540-208ENST00000589857 MON2Q7Z3U7 1717 aa13.48□□□□□ -0.25
ZNF540-208ENST00000589857 NME9Q86XW9 330 aa13.48□□□□□ -0.25
ZNF540-208ENST00000589857 THRAP3Q9Y2W1 955 aaKnown RBP13.48□□□□□ -0.25
ZNF540-208ENST00000589857 TTC21BQ7Z4L5 1316 aa13.47□□□□□ -0.25
ZNF540-208ENST00000589857 ATF7IPQ6VMQ6 1270 aa13.47□□□□□ -0.25
ZNF540-208ENST00000589857 ITSN1Q15811 1721 aa13.47□□□□□ -0.25
ZNF540-208ENST00000589857 RTL5Q5HYW3 569 aaPredicted RBP13.46□□□□□ -0.25
ZNF540-208ENST00000589857 ARHGAP45Q92619 1136 aa13.46□□□□□ -0.25
ZNF540-208ENST00000589857 USP35Q9P2H5 1018 aa13.46□□□□□ -0.25
ZNF540-208ENST00000589857 KIAA0232Q92628 1395 aa13.45□□□□□ -0.26
ZNF540-208ENST00000589857 RGS3P49796 1198 aa13.45□□□□□ -0.26
ZNF540-208ENST00000589857 TSR2Q969E8 191 aaKnown RBP13.45□□□□□ -0.26
ZNF540-208ENST00000589857 UPF2Q9HAU5 1272 aaKnown RBP13.45□□□□□ -0.26
ZNF540-208ENST00000589857 EMILIN1Q9Y6C2 1016 aa13.45□□□□□ -0.26
ZNF540-208ENST00000589857 USP6P35125 1406 aa13.45□□□□□ -0.26
ZNF540-208ENST00000589857 PRR36Q9H6K5 1346 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 ZC3H6P61129 1189 aaKnown RBP13.44□□□□□ -0.26
ZNF540-208ENST00000589857 HDAC1Q13547 482 aaPredicted RBP13.44□□□□□ -0.26
ZNF540-208ENST00000589857 SSH1Q8WYL5 1049 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 AKAP12Q02952 1782 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 OVOS2A0A0J9YW53 1432 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 OVOS2Q6IE36 1432 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 NRKQ7Z2Y5 1582 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 ABCA3Q99758 1704 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 USP31Q70CQ4 1352 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 TOPAZ1Q8N9V7 1692 aa13.44□□□□□ -0.26
ZNF540-208ENST00000589857 ACEP12821 1306 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 KCNQ2O43526 872 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 IGHDP01880 384 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 CHRNA2Q15822 529 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 C8orf34Q49A92 452 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 NRAPQ86VF7 1730 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 BCL2L13Q9BXK5 485 aa13.43□□□□□ -0.26
ZNF540-208ENST00000589857 RGPD8O14715 1765 aaPredicted RBP13.43□□□□□ -0.26
ZNF540-208ENST00000589857 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
ZNF540-208ENST00000589857 TRIM27P14373 513 aa13.42□□□□□ -0.26
ZNF540-208ENST00000589857 ITPRIPQ8IWB1 547 aa13.42□□□□□ -0.26
ZNF540-208ENST00000589857 ABTB2Q8N961 1025 aa13.42□□□□□ -0.26
ZNF540-208ENST00000589857 CFAP44Q96MT7 982 aa13.42□□□□□ -0.26
ZNF540-208ENST00000589857 KIF24Q5T7B8 1368 aa13.42□□□□□ -0.26
ZNF540-208ENST00000589857 THSD7AQ9UPZ6 1657 aa13.41□□□□□ -0.26
ZNF540-208ENST00000589857 RLBP1P12271 317 aa13.41□□□□□ -0.26
ZNF540-208ENST00000589857 API5Q9BZZ5 524 aaKnown RBP13.41□□□□□ -0.26
ZNF540-208ENST00000589857 NOB1Q9ULX3 412 aaKnown RBP13.41□□□□□ -0.26
ZNF540-208ENST00000589857 HMOX1P09601 288 aa13.4□□□□□ -0.26
ZNF540-208ENST00000589857 ZNF853P0CG23 659 aa13.4□□□□□ -0.26
ZNF540-208ENST00000589857 ALS2Q96Q42 1657 aa13.4□□□□□ -0.26
ZNF540-208ENST00000589857 SSH2Q76I76 1423 aa13.39□□□□□ -0.27
ZNF540-208ENST00000589857 TRPM3Q9HCF6 1732 aaPredicted RBP13.39□□□□□ -0.27
ZNF540-208ENST00000589857 PLSCR1O15162 318 aa13.39□□□□□ -0.27
ZNF540-208ENST00000589857 PCDHB15Q9Y5E8 787 aa13.39□□□□□ -0.27
ZNF540-208ENST00000589857 CPDO75976 1380 aa13.38□□□□□ -0.27
ZNF540-208ENST00000589857 FLT4P35916 1363 aa13.38□□□□□ -0.27
ZNF540-208ENST00000589857 BECN1Q14457 450 aa13.38□□□□□ -0.27
ZNF540-208ENST00000589857 RRS1Q15050 365 aaKnown RBP13.38□□□□□ -0.27
ZNF540-208ENST00000589857 NUTM2GQ5VZR2 741 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms