RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 NME9Q86XW9 330 aa12.83□□□□□ -0.36
VPS25-202ENST00000589219 PHRF1Q9P1Y6 1649 aaKnown RBP12.83□□□□□ -0.36
VPS25-202ENST00000589219 BCAR3O75815 825 aa12.82□□□□□ -0.36
VPS25-202ENST00000589219 RSPH6AQ9H0K4 717 aa12.82□□□□□ -0.36
VPS25-202ENST00000589219 SPATA31A5Q5VU36 1347 aa12.82□□□□□ -0.36
VPS25-202ENST00000589219 SPATA31A7Q8IWB4 1347 aa12.82□□□□□ -0.36
VPS25-202ENST00000589219 TTC21AQ8NDW8 1320 aa12.82□□□□□ -0.36
VPS25-202ENST00000589219 KIAA0232Q92628 1395 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 SSH2Q76I76 1423 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 USP54Q70EL1 1684 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 CALD1Q05682 793 aaKnown RBP12.81□□□□□ -0.36
VPS25-202ENST00000589219 C1QBPQ07021 282 aaKnown RBP12.81□□□□□ -0.36
VPS25-202ENST00000589219 ABTB2Q8N961 1025 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 TTC21BQ7Z4L5 1316 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 MAP2P11137 1827 aaKnown RBP12.81□□□□□ -0.36
VPS25-202ENST00000589219 USP31Q70CQ4 1352 aa12.81□□□□□ -0.36
VPS25-202ENST00000589219 ZC3H6P61129 1189 aaKnown RBP12.8□□□□□ -0.36
VPS25-202ENST00000589219 NUTM2GQ5VZR2 741 aa12.8□□□□□ -0.36
VPS25-202ENST00000589219 TRIM35Q9UPQ4 493 aa12.8□□□□□ -0.36
VPS25-202ENST00000589219 IL13P35225 146 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 ANP32AP39687 249 aaKnown RBP12.79□□□□□ -0.36
VPS25-202ENST00000589219 BAG6P46379 1132 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 EVA1CP58658 441 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 LMOD3Q0VAK6 560 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 CHRNA2Q15822 529 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 NFE2L2Q16236 605 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 SRCAPQ6ZRS2 3230 aa12.79□□□□□ -0.36
VPS25-202ENST00000589219 THSD7AQ9UPZ6 1657 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 PRKAR2BP31323 418 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 RIPK4P57078 832 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 DEFB132Q7Z7B7 95 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 STRN4Q9NRL3 753 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 EMILIN1Q9Y6C2 1016 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 RGPD1P0DJD0 1748 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 SPATA31A1Q5TZJ5 1347 aa12.78□□□□□ -0.36
VPS25-202ENST00000589219 CLUAP1Q96AJ1 413 aa12.77□□□□□ -0.37
VPS25-202ENST00000589219 ZNF428Q96B54 188 aa12.77□□□□□ -0.37
VPS25-202ENST00000589219 CPDO75976 1380 aa12.77□□□□□ -0.37
VPS25-202ENST00000589219 PPM1GO15355 546 aaPredicted RBP12.76□□□□□ -0.37
VPS25-202ENST00000589219 ANP32EQ9BTT0 268 aa12.76□□□□□ -0.37
VPS25-202ENST00000589219 USP19O94966 1318 aa12.76□□□□□ -0.37
VPS25-202ENST00000589219 KIF16BQ96L93 1317 aa12.76□□□□□ -0.37
VPS25-202ENST00000589219 GCP02774 474 aa12.75□□□□□ -0.37
VPS25-202ENST00000589219 ZKSCAN2Q63HK3 967 aa12.75□□□□□ -0.37
VPS25-202ENST00000589219 ERICH6Q7L0X2 663 aa12.75□□□□□ -0.37
VPS25-202ENST00000589219 PEAK1Q9H792 1746 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 PIK3C2AO00443 1686 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 KIF24Q5T7B8 1368 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 PDE4AP27815 886 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 EXOSC9Q06265 439 aaKnown RBP12.74□□□□□ -0.37
VPS25-202ENST00000589219 ALDH1L2Q3SY69 923 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 FAM196AQ6ZSG2 479 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 BARGINQ6ZT62 677 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 FRAT1Q92837 279 aaPredicted RBP12.74□□□□□ -0.37
VPS25-202ENST00000589219 BACH2Q9BYV9 841 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 SMC4Q9NTJ3 1288 aa12.74□□□□□ -0.37
VPS25-202ENST00000589219 LMO7Q8WWI1 1683 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 NLRP6P59044 892 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 PANK1Q8TE04 598 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 TSR2Q969E8 191 aaKnown RBP12.73□□□□□ -0.37
VPS25-202ENST00000589219 IFT57Q9NWB7 429 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 COG6Q9Y2V7 657 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 THRAP3Q9Y2W1 955 aaKnown RBP12.73□□□□□ -0.37
VPS25-202ENST00000589219 CAMTA1Q9Y6Y1 1673 aa12.73□□□□□ -0.37
VPS25-202ENST00000589219 FLT4P35916 1363 aa12.72□□□□□ -0.37
VPS25-202ENST00000589219 KCNA4P22459 653 aa12.72□□□□□ -0.37
VPS25-202ENST00000589219 GNAI1P63096 354 aa12.72□□□□□ -0.37
VPS25-202ENST00000589219 MVPQ14764 893 aaKnown RBP12.72□□□□□ -0.37
VPS25-202ENST00000589219 RRS1Q15050 365 aaKnown RBP12.72□□□□□ -0.37
VPS25-202ENST00000589219 FAM182BQ5T319 152 aa12.72□□□□□ -0.37
VPS25-202ENST00000589219 FTSJ3Q8IY81 847 aaKnown RBP12.72□□□□□ -0.37
VPS25-202ENST00000589219 HMOX1P09601 288 aa12.71□□□□□ -0.37
VPS25-202ENST00000589219 BRPF1P55201 1214 aaPredicted RBP12.71□□□□□ -0.37
VPS25-202ENST00000589219 LARP1Q6PKG0 1096 aaKnown RBP12.71□□□□□ -0.37
VPS25-202ENST00000589219 DZIP1LQ8IYY4 767 aaKnown RBP12.71□□□□□ -0.37
VPS25-202ENST00000589219 TNS1Q9HBL0 1735 aaKnown RBP12.71□□□□□ -0.38
VPS25-202ENST00000589219 DISP2A7MBM2 1401 aa12.71□□□□□ -0.38
VPS25-202ENST00000589219 IPO8O15397 1037 aaKnown RBP12.7□□□□□ -0.38
VPS25-202ENST00000589219 EN1Q05925 392 aaPredicted RBP12.7□□□□□ -0.38
VPS25-202ENST00000589219 EIF4A2Q14240 407 aaKnown RBP12.7□□□□□ -0.38
VPS25-202ENST00000589219 COL5A2P05997 1499 aaPredicted RBP12.7□□□□□ -0.38
VPS25-202ENST00000589219 RTL1A6NKG5 1358 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 SLIT3O75094 1523 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 ZNF853P0CG23 659 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 RLBP1P12271 317 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 FBLN1P23142 703 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 FAM161AQ3B820 660 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 ATF7IPQ6VMQ6 1270 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 SSH1Q8WYL5 1049 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 IPO9Q96P70 1041 aaKnown RBP12.69□□□□□ -0.38
VPS25-202ENST00000589219 BCL2L13Q9BXK5 485 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 DDX19BQ9UMR2 479 aa12.69□□□□□ -0.38
VPS25-202ENST00000589219 ZBTB7CA1YPR0 619 aa12.68□□□□□ -0.38
VPS25-202ENST00000589219 TRIM37O94972 964 aa12.68□□□□□ -0.38
VPS25-202ENST00000589219 KCNH5Q8NCM2 988 aa12.68□□□□□ -0.38
VPS25-202ENST00000589219 PHACTR3Q96KR7 559 aa12.68□□□□□ -0.38
VPS25-202ENST00000589219 NOP58Q9Y2X3 529 aaKnown RBP12.68□□□□□ -0.38
VPS25-202ENST00000589219 LRP5O75197 1615 aa12.68□□□□□ -0.38
VPS25-202ENST00000589219 CRB1P82279 1406 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms