RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SETD1AO15047 1707 aaKnown RBP15.02■□□□□ -0
SHMT1-208ENST00000582352 CAVIN1Q6NZI2 390 aaKnown RBP15.02□□□□□ -0.01
SHMT1-208ENST00000582352 CEP85Q6P2H3 762 aa15.02□□□□□ -0.01
SHMT1-208ENST00000582352 APBB1O00213 710 aa15.02□□□□□ -0.01
SHMT1-208ENST00000582352 WASLO00401 505 aaPredicted RBP15.02□□□□□ -0.01
SHMT1-208ENST00000582352 REC8O95072 547 aa15.02□□□□□ -0.01
SHMT1-208ENST00000582352 SDSP20132 328 aa15.02□□□□□ -0.01
SHMT1-208ENST00000582352 ZNF445P59923 1031 aa15.02□□□□□ -0.01
SHMT1-208ENST00000582352 OTUD7AQ8TE49 926 aaPredicted RBP15.02□□□□□ -0.01
SHMT1-208ENST00000582352 RGS12O14924 1447 aa15.01□□□□□ -0.01
SHMT1-208ENST00000582352 CYP2E1P05181 493 aaPredicted RBP15.01□□□□□ -0.01
SHMT1-208ENST00000582352 ZSCAN30Q86W11 494 aa15.01□□□□□ -0.01
SHMT1-208ENST00000582352 MON2Q7Z3U7 1717 aa15.01□□□□□ -0.01
SHMT1-208ENST00000582352 MSNP26038 577 aaKnown RBP15□□□□□ -0.01
SHMT1-208ENST00000582352 ZSCAN23Q3MJ62 389 aa15□□□□□ -0.01
SHMT1-208ENST00000582352 RTL1A6NKG5 1358 aa15□□□□□ -0.01
SHMT1-208ENST00000582352 A2ML1A8K2U0 1454 aa15□□□□□ -0.01
SHMT1-208ENST00000582352 PTPRCP08575 1304 aa15□□□□□ -0.01
SHMT1-208ENST00000582352 NRKQ7Z2Y5 1582 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 CPS1P31327 1500 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 TPM2P07951 284 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 LMBRD1Q9NUN5 540 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 ITSN1Q15811 1721 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 SMARCA5O60264 1052 aaPredicted RBP14.99□□□□□ -0.01
SHMT1-208ENST00000582352 PKP1Q13835 747 aa14.99□□□□□ -0.01
SHMT1-208ENST00000582352 C3P01024 1663 aa14.98□□□□□ -0.01
SHMT1-208ENST00000582352 KRT24Q2M2I5 525 aa14.98□□□□□ -0.01
SHMT1-208ENST00000582352 NUDT16Q96DE0 195 aaKnown RBP14.98□□□□□ -0.01
SHMT1-208ENST00000582352 KIAA0232Q92628 1395 aa14.98□□□□□ -0.01
SHMT1-208ENST00000582352 ERC2O15083 957 aa14.97□□□□□ -0.01
SHMT1-208ENST00000582352 HMMRO75330 724 aa14.97□□□□□ -0.01
SHMT1-208ENST00000582352 OSCARQ8IYS5 282 aa14.97□□□□□ -0.01
SHMT1-208ENST00000582352 ZGPATQ8N5A5 531 aaKnown RBP14.97□□□□□ -0.01
SHMT1-208ENST00000582352 MEIS3Q99687 375 aa14.97□□□□□ -0.01
SHMT1-208ENST00000582352 SULT6B1Q6IMI4 303 aa14.96□□□□□ -0.01
SHMT1-208ENST00000582352 AEBP1Q8IUX7 1158 aa14.96□□□□□ -0.01
SHMT1-208ENST00000582352 CCDC61Q9Y6R9 512 aa14.96□□□□□ -0.01
SHMT1-208ENST00000582352 AKAP12Q02952 1782 aa14.96□□□□□ -0.01
SHMT1-208ENST00000582352 CHL1O00533 1208 aa14.96□□□□□ -0.01
SHMT1-208ENST00000582352 PRPF40AO75400 957 aaKnown RBP14.96□□□□□ -0.02
SHMT1-208ENST00000582352 KIAA1211Q6ZU35 1233 aa14.96□□□□□ -0.02
SHMT1-208ENST00000582352 MCM10Q7L590 875 aa14.96□□□□□ -0.02
SHMT1-208ENST00000582352 NCKAP5LQ9HCH0 1330 aa14.95□□□□□ -0.02
SHMT1-208ENST00000582352 EIF4A2Q14240 407 aaKnown RBP14.95□□□□□ -0.02
SHMT1-208ENST00000582352 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.95□□□□□ -0.02
SHMT1-208ENST00000582352 HS1BP3Q53T59 392 aa14.94□□□□□ -0.02
SHMT1-208ENST00000582352 TXNDC2Q86VQ3 553 aa14.94□□□□□ -0.02
SHMT1-208ENST00000582352 NRXN3Q9Y4C0 1643 aa14.94□□□□□ -0.02
SHMT1-208ENST00000582352 SPATA31D1Q6ZQQ2 1576 aa14.94□□□□□ -0.02
SHMT1-208ENST00000582352 RBSNQ9H1K0 784 aa14.93□□□□□ -0.02
SHMT1-208ENST00000582352 METP08581 1390 aa14.93□□□□□ -0.02
SHMT1-208ENST00000582352 PRIM1P49642 420 aaKnown RBP14.93□□□□□ -0.02
SHMT1-208ENST00000582352 GPT2Q8TD30 523 aa14.93□□□□□ -0.02
SHMT1-208ENST00000582352 OFD1O75665 1012 aa14.92□□□□□ -0.02
SHMT1-208ENST00000582352 SLC4A2P04920 1241 aa14.92□□□□□ -0.02
SHMT1-208ENST00000582352 RBM27Q9P2N5 1060 aaKnown RBP14.92□□□□□ -0.02
SHMT1-208ENST00000582352 ZDHHC9Q9Y397 364 aa14.92□□□□□ -0.02
SHMT1-208ENST00000582352 PDE1AP54750 535 aa14.92□□□□□ -0.02
SHMT1-208ENST00000582352 SLC4A10Q6U841 1118 aa14.92□□□□□ -0.02
SHMT1-208ENST00000582352 OSBPL3Q9H4L5 887 aa14.91□□□□□ -0.02
SHMT1-208ENST00000582352 NEK4P51957 841 aa14.91□□□□□ -0.02
SHMT1-208ENST00000582352 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.91□□□□□ -0.02
SHMT1-208ENST00000582352 MBD3O95983 291 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 MCCP23508 829 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 MCM2P49736 904 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 CCT4P50991 539 aaKnown RBP14.9□□□□□ -0.02
SHMT1-208ENST00000582352 PDLIM2Q96JY6 352 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 LRSAM1Q6UWE0 723 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 PPP6R1Q9UPN7 881 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 TMX3Q96JJ7 454 aa14.9□□□□□ -0.02
SHMT1-208ENST00000582352 NOL7Q9UMY1 257 aaKnown RBP14.9□□□□□ -0.02
SHMT1-208ENST00000582352 SYCE3A1L190 88 aa14.89□□□□□ -0.03
SHMT1-208ENST00000582352 FOXD4L5Q5VV16 416 aaPredicted RBP14.89□□□□□ -0.03
SHMT1-208ENST00000582352 FOXD4L4Q8WXT5 416 aaPredicted RBP14.89□□□□□ -0.03
SHMT1-208ENST00000582352 TMEM63CQ9P1W3 806 aa14.89□□□□□ -0.03
SHMT1-208ENST00000582352 CRB1P82279 1406 aa14.89□□□□□ -0.03
SHMT1-208ENST00000582352 TECPR2O15040 1411 aa14.89□□□□□ -0.03
SHMT1-208ENST00000582352 GNAI2P04899 355 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 EXOC6BQ9Y2D4 811 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 AGLP35573 1532 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 PRR36Q9H6K5 1346 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 F6X3S4 739 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 TSPYL4Q9UJ04 414 aa14.88□□□□□ -0.03
SHMT1-208ENST00000582352 RGPD1P0DJD0 1748 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 OVOS2A0A0J9YW53 1432 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 OVOS2Q6IE36 1432 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 TTC21BQ7Z4L5 1316 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 RTF1Q92541 710 aaKnown RBP14.87□□□□□ -0.03
SHMT1-208ENST00000582352 CHAMP1Q96JM3 812 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 ESYT1Q9BSJ8 1104 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 TSHZ3Q63HK5 1081 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 LRRCC1Q9C099 1032 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 MIS18AQ9NYP9 233 aa14.87□□□□□ -0.03
SHMT1-208ENST00000582352 ZNF500O60304 480 aaPredicted RBP14.86□□□□□ -0.03
SHMT1-208ENST00000582352 MX1P20591 662 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 TERF1P54274 439 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 HSP90AB2PQ58FF8 381 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 VSIG10Q8N0Z9 540 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 PEAK1Q9H792 1746 aa14.86□□□□□ -0.03
SHMT1-208ENST00000582352 G2E3Q7L622 706 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms