RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 PLEKHG3A1L390 1219 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
TOP3A-209ENST00000580095 PLEKHM2Q8IWE5 1019 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 TSPYL4Q9UJ04 414 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 EID1Q9Y6B2 187 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 TECPR2O15040 1411 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 MSH6P52701 1360 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 VSIG10Q8N0Z9 540 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 EYA1Q99502 592 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 CHMP5Q9NZZ3 219 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 USP6P35125 1406 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 HSP90AA1P07900 732 aaKnown RBP13.06□□□□□ -0.32
TOP3A-209ENST00000580095 RBM25P49756 843 aaKnown RBP13.06□□□□□ -0.32
TOP3A-209ENST00000580095 NLRP6P59044 892 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 TSHZ3Q63HK5 1081 aa13.06□□□□□ -0.32
TOP3A-209ENST00000580095 ZBTB7CA1YPR0 619 aa13.05□□□□□ -0.32
TOP3A-209ENST00000580095 USHBP1Q8N6Y0 703 aa13.05□□□□□ -0.32
TOP3A-209ENST00000580095 RTF1Q92541 710 aaKnown RBP13.05□□□□□ -0.32
TOP3A-209ENST00000580095 ADAMTSL3P82987 1691 aa13.05□□□□□ -0.32
TOP3A-209ENST00000580095 DLG5Q8TDM6 1919 aa13.05□□□□□ -0.32
TOP3A-209ENST00000580095 INTS3Q68E01 1043 aaKnown RBP13.04□□□□□ -0.32
TOP3A-209ENST00000580095 CEP85Q6P2H3 762 aa13.04□□□□□ -0.32
TOP3A-209ENST00000580095 CHMP4BQ9H444 224 aaKnown RBP13.04□□□□□ -0.32
TOP3A-209ENST00000580095 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.04□□□□□ -0.32
TOP3A-209ENST00000580095 OVOS2A0A0J9YW53 1432 aa13.04□□□□□ -0.32
TOP3A-209ENST00000580095 OVOS2Q6IE36 1432 aa13.04□□□□□ -0.32
TOP3A-209ENST00000580095 DCTPP1Q9H773 170 aa13.04□□□□□ -0.32
TOP3A-209ENST00000580095 RGS12O14924 1447 aa13.03□□□□□ -0.32
TOP3A-209ENST00000580095 FER1L4A9Z1Z3 1794 aa13.03□□□□□ -0.32
TOP3A-209ENST00000580095 C3P01024 1663 aa13.02□□□□□ -0.32
TOP3A-209ENST00000580095 A0A0U1RQG5 324 aaPredicted RBP13.02□□□□□ -0.33
TOP3A-209ENST00000580095 TRAK2O60296 914 aa13.02□□□□□ -0.33
TOP3A-209ENST00000580095 CDC45O75419 566 aa13.02□□□□□ -0.33
TOP3A-209ENST00000580095 KCNA6P17658 529 aa13.02□□□□□ -0.33
TOP3A-209ENST00000580095 ANKRD44Q8N8A2 993 aa13.02□□□□□ -0.33
TOP3A-209ENST00000580095 MON2Q7Z3U7 1717 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 PANK2Q9BZ23 570 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 EXOC6BQ9Y2D4 811 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 PLEKHG1Q9ULL1 1385 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 GLIPR1L2Q4G1C9 344 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 GAS2L2Q8NHY3 880 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 TNPO1Q92973 898 aaKnown RBP13.01□□□□□ -0.33
TOP3A-209ENST00000580095 RTL1A6NKG5 1358 aa13.01□□□□□ -0.33
TOP3A-209ENST00000580095 PEAK1Q9H792 1746 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 CRB1P82279 1406 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 ATP10DQ9P241 1426 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 FGD1P98174 961 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 PDE4CQ08493 712 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 TTC22Q5TAA0 569 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 SDSP20132 328 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 ABTB2Q8N961 1025 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 KNDC1Q76NI1 1749 aa13□□□□□ -0.33
TOP3A-209ENST00000580095 RIMS1Q86UR5 1692 aaKnown RBP12.99□□□□□ -0.33
TOP3A-209ENST00000580095 UBR1Q8IWV7 1749 aa12.99□□□□□ -0.33
TOP3A-209ENST00000580095 FKBP5Q13451 457 aaPredicted RBP12.99□□□□□ -0.33
TOP3A-209ENST00000580095 ITSN1Q15811 1721 aa12.99□□□□□ -0.33
TOP3A-209ENST00000580095 SNX21Q969T3 373 aa12.98□□□□□ -0.33
TOP3A-209ENST00000580095 USP31Q70CQ4 1352 aa12.98□□□□□ -0.33
TOP3A-209ENST00000580095 CEP170BQ9Y4F5 1589 aaPredicted RBP12.98□□□□□ -0.33
TOP3A-209ENST00000580095 DDIT3P35638 169 aa12.98□□□□□ -0.33
TOP3A-209ENST00000580095 FLT4P35916 1363 aa12.97□□□□□ -0.33
TOP3A-209ENST00000580095 K7ELQ4 463 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-209ENST00000580095 XRCC6P12956 609 aaKnown RBP eCLIP12.97□□□□□ -0.33
TOP3A-209ENST00000580095 SSFA2P28290 1259 aa12.97□□□□□ -0.33
TOP3A-209ENST00000580095 RPAP2Q8IXW5 612 aaPredicted RBP12.97□□□□□ -0.33
TOP3A-209ENST00000580095 AKAP12Q02952 1782 aa12.97□□□□□ -0.33
TOP3A-209ENST00000580095 IL17REQ8NFR9 667 aa12.97□□□□□ -0.33
TOP3A-209ENST00000580095 PTPRCP08575 1304 aa12.97□□□□□ -0.33
TOP3A-209ENST00000580095 SSH2Q76I76 1423 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 HOXC9P31274 260 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 XPCQ01831 940 aaPredicted RBP12.96□□□□□ -0.33
TOP3A-209ENST00000580095 STK31Q9BXU1 1019 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 TBX22Q9Y458 520 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 KIAA0232Q92628 1395 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 PNMA6EA0A0J9YXQ4 647 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 GOLGA6L3A6NEY3 463 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 SBNO1A3KN83 1393 aa12.96□□□□□ -0.33
TOP3A-209ENST00000580095 FLIIQ13045 1269 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 IGSF1Q8N6C5 1336 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 EIF2S2P20042 333 aaKnown RBP12.95□□□□□ -0.34
TOP3A-209ENST00000580095 RBM10P98175 930 aaKnown RBP12.95□□□□□ -0.34
TOP3A-209ENST00000580095 AEBP2Q6ZN18 517 aaPredicted RBP12.95□□□□□ -0.34
TOP3A-209ENST00000580095 TTC21AQ8NDW8 1320 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 ARHGEF10O15013 1369 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 GNAT3A8MTJ3 354 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 HAP1P54257 671 aaPredicted RBP12.95□□□□□ -0.34
TOP3A-209ENST00000580095 PKP1Q13835 747 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 THEMISQ8N1K5 641 aaPredicted RBP12.95□□□□□ -0.34
TOP3A-209ENST00000580095 USP26Q9BXU7 913 aa12.95□□□□□ -0.34
TOP3A-209ENST00000580095 ANXA1P04083 346 aa12.94□□□□□ -0.34
TOP3A-209ENST00000580095 CHAMP1Q96JM3 812 aa12.94□□□□□ -0.34
TOP3A-209ENST00000580095 PHAXQ9H814 394 aaKnown RBP12.94□□□□□ -0.34
TOP3A-209ENST00000580095 PDIA4P13667 645 aaKnown RBP12.94□□□□□ -0.34
TOP3A-209ENST00000580095 NRKQ7Z2Y5 1582 aa12.94□□□□□ -0.34
TOP3A-209ENST00000580095 NCOA3Q9Y6Q9 1424 aa12.93□□□□□ -0.34
TOP3A-209ENST00000580095 RAB3GAP1Q15042 981 aa12.93□□□□□ -0.34
TOP3A-209ENST00000580095 FOXD4L5Q5VV16 416 aaPredicted RBP12.93□□□□□ -0.34
TOP3A-209ENST00000580095 NOL8Q76FK4 1167 aaKnown RBP12.93□□□□□ -0.34
TOP3A-209ENST00000580095 FOXD4L4Q8WXT5 416 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms