RNA–Protein interactions for RNA: ENST00000579605.5

CDK5RAP3-213, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 560 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-213ENST00000579605 NME9Q86XW9 330 aa19.01■□□□□ 0.63
CDK5RAP3-213ENST00000579605 IGSF1Q8N6C5 1336 aa19■□□□□ 0.63
CDK5RAP3-213ENST00000579605 ANKRD36BQ8N2N9 1353 aa19■□□□□ 0.63
CDK5RAP3-213ENST00000579605 TUBGCP6Q96RT7 1819 aa19■□□□□ 0.63
CDK5RAP3-213ENST00000579605 NSD2O96028 1365 aa18.97■□□□□ 0.63
CDK5RAP3-213ENST00000579605 TOMM70O94826 608 aa18.97■□□□□ 0.63
CDK5RAP3-213ENST00000579605 HTRA3P83110 453 aa18.97■□□□□ 0.63
CDK5RAP3-213ENST00000579605 USP47Q96K76 1375 aa18.96■□□□□ 0.63
CDK5RAP3-213ENST00000579605 TNS4Q8IZW8 715 aa18.96■□□□□ 0.63
CDK5RAP3-213ENST00000579605 ZCRB1Q8TBF4 217 aaKnown RBP18.96■□□□□ 0.63
CDK5RAP3-213ENST00000579605 KIAA1210Q9ULL0 1709 aa18.96■□□□□ 0.63
CDK5RAP3-213ENST00000579605 SMIM5Q71RC9 77 aa18.95■□□□□ 0.62
CDK5RAP3-213ENST00000579605 FLAD1Q8NFF5 587 aa18.95■□□□□ 0.62
CDK5RAP3-213ENST00000579605 USP31Q70CQ4 1352 aa18.93■□□□□ 0.62
CDK5RAP3-213ENST00000579605 PHF14O94880 888 aa18.93■□□□□ 0.62
CDK5RAP3-213ENST00000579605 IP6K1Q92551 441 aa18.92■□□□□ 0.62
CDK5RAP3-213ENST00000579605 NMRK2Q9NPI5 230 aa18.92■□□□□ 0.62
CDK5RAP3-213ENST00000579605 TMC1Q8TDI8 760 aa18.91■□□□□ 0.62
CDK5RAP3-213ENST00000579605 KLRG1Q96E93 195 aa18.91■□□□□ 0.62
CDK5RAP3-213ENST00000579605 PRELPP51888 382 aa18.9■□□□□ 0.62
CDK5RAP3-213ENST00000579605 AK7Q96M32 723 aa18.9■□□□□ 0.62
CDK5RAP3-213ENST00000579605 AMIGO3Q86WK7 504 aa18.89■□□□□ 0.61
CDK5RAP3-213ENST00000579605 C16orf71Q8IYS4 520 aaPredicted RBP18.88■□□□□ 0.61
CDK5RAP3-213ENST00000579605 LY75O60449 1722 aa18.88■□□□□ 0.61
CDK5RAP3-213ENST00000579605 ARHGAP27Q6ZUM4 889 aa18.87■□□□□ 0.61
CDK5RAP3-213ENST00000579605 DOT1LQ8TEK3 1739 aa18.87■□□□□ 0.61
CDK5RAP3-213ENST00000579605 SBNO2Q9Y2G9 1366 aa18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 MPRIPQ6WCQ1 1025 aa18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 HDGFL2Q7Z4V5 671 aaPredicted RBP18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 JMYQ8N9B5 988 aa18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 BCS1LQ9Y276 419 aa18.86■□□□□ 0.61
CDK5RAP3-213ENST00000579605 FBLN1P23142 703 aa18.85■□□□□ 0.61
CDK5RAP3-213ENST00000579605 AMPHP49418 695 aa18.85■□□□□ 0.61
CDK5RAP3-213ENST00000579605 PALLDQ8WX93 1383 aa18.84■□□□□ 0.61
CDK5RAP3-213ENST00000579605 LTN1O94822 1766 aa18.84■□□□□ 0.61
CDK5RAP3-213ENST00000579605 USHBP1Q8N6Y0 703 aa18.84■□□□□ 0.61
CDK5RAP3-213ENST00000579605 RBM46Q8TBY0 533 aaKnown RBP18.84■□□□□ 0.61
CDK5RAP3-213ENST00000579605 SLC12A5Q9H2X9 1139 aa18.84■□□□□ 0.61
CDK5RAP3-213ENST00000579605 HMGB2P26583 209 aaKnown RBP18.83■□□□□ 0.6
CDK5RAP3-213ENST00000579605 A0A0G2JLW4 131 aa18.82■□□□□ 0.6
CDK5RAP3-213ENST00000579605 HOXC9P31274 260 aa18.82■□□□□ 0.6
CDK5RAP3-213ENST00000579605 MEGF6O75095 1541 aa18.82■□□□□ 0.6
CDK5RAP3-213ENST00000579605 L3MBTL2Q969R5 705 aa18.81■□□□□ 0.6
CDK5RAP3-213ENST00000579605 MAP3K19Q56UN5 1328 aa18.8■□□□□ 0.6
CDK5RAP3-213ENST00000579605 NBPF6Q5VWK0 638 aa18.8■□□□□ 0.6
CDK5RAP3-213ENST00000579605 RAPGEF4Q8WZA2 1011 aa18.8■□□□□ 0.6
CDK5RAP3-213ENST00000579605 NBPF4Q96M43 638 aa18.8■□□□□ 0.6
CDK5RAP3-213ENST00000579605 FSTL1Q12841 308 aa18.79■□□□□ 0.6
CDK5RAP3-213ENST00000579605 ROCK2O75116 1388 aaKnown RBP18.79■□□□□ 0.6
CDK5RAP3-213ENST00000579605 CD163L1Q9NR16 1453 aa18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 FCHSD2O94868 740 aa18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 MMP10P09238 476 aa18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 TATP17735 454 aaPredicted RBP18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 C9orf131Q5VYM1 1079 aa18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 SMARCC1Q92922 1105 aaPredicted RBP18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 C5P01031 1676 aa18.78■□□□□ 0.6
CDK5RAP3-213ENST00000579605 MON2Q7Z3U7 1717 aa18.77■□□□□ 0.6
CDK5RAP3-213ENST00000579605 WDR90Q96KV7 1748 aa18.77■□□□□ 0.6
CDK5RAP3-213ENST00000579605 SSFA2P28290 1259 aa18.77■□□□□ 0.6
CDK5RAP3-213ENST00000579605 RRAGCQ9HB90 399 aa18.77■□□□□ 0.6
CDK5RAP3-213ENST00000579605 TERF2IPQ9NYB0 399 aa18.77■□□□□ 0.6
CDK5RAP3-213ENST00000579605 EDC4Q6P2E9 1401 aaKnown RBP18.76■□□□□ 0.59
CDK5RAP3-213ENST00000579605 LINC00116Q8NCU8 138 aa18.76■□□□□ 0.59
CDK5RAP3-213ENST00000579605 COG3Q96JB2 828 aa18.76■□□□□ 0.59
CDK5RAP3-213ENST00000579605 GNPATO15228 680 aa18.75■□□□□ 0.59
CDK5RAP3-213ENST00000579605 TGFB2P61812 414 aa18.75■□□□□ 0.59
CDK5RAP3-213ENST00000579605 PXDNLA1KZ92 1463 aa18.75■□□□□ 0.59
CDK5RAP3-213ENST00000579605 HSPA1AP0DMV8 641 aaKnown RBP18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 HSPA1BP0DMV9 641 aaKnown RBP18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 DPEP1P16444 411 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 PIGBQ92521 554 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 C4BP0C0L5 1744 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 CGNL1Q0VF96 1302 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 PCDH11XQ9BZA7 1347 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 PCDH11YQ9BZA8 1340 aa18.74■□□□□ 0.59
CDK5RAP3-213ENST00000579605 USP54Q70EL1 1684 aa18.73■□□□□ 0.59
CDK5RAP3-213ENST00000579605 A0A1W2PP64 1363 aa18.73■□□□□ 0.59
CDK5RAP3-213ENST00000579605 RRS1Q15050 365 aaKnown RBP18.73■□□□□ 0.59
CDK5RAP3-213ENST00000579605 CICQ96RK0 1608 aaPredicted RBP18.73■□□□□ 0.59
CDK5RAP3-213ENST00000579605 NSD3Q9BZ95 1437 aa18.73■□□□□ 0.59
CDK5RAP3-213ENST00000579605 LOC102724428A0A0B4J2F2 783 aa18.72■□□□□ 0.59
CDK5RAP3-213ENST00000579605 SIK1P57059 783 aa18.72■□□□□ 0.59
CDK5RAP3-213ENST00000579605 FAM208AQ9UK61 1670 aaKnown RBP18.72■□□□□ 0.59
CDK5RAP3-213ENST00000579605 KDM2BQ8NHM5 1336 aa18.72■□□□□ 0.59
CDK5RAP3-213ENST00000579605 CYP27B1O15528 508 aa18.71■□□□□ 0.59
CDK5RAP3-213ENST00000579605 KCPQ6ZWJ8 1503 aa18.7■□□□□ 0.58
CDK5RAP3-213ENST00000579605 RNF181Q9P0P0 153 aa18.7■□□□□ 0.58
CDK5RAP3-213ENST00000579605 ATP6V1AP38606 617 aa18.69■□□□□ 0.58
CDK5RAP3-213ENST00000579605 TMF1P82094 1093 aa18.69■□□□□ 0.58
CDK5RAP3-213ENST00000579605 ITPK1Q13572 414 aa18.69■□□□□ 0.58
CDK5RAP3-213ENST00000579605 SMC1BQ8NDV3 1235 aa18.69■□□□□ 0.58
CDK5RAP3-213ENST00000579605 CCDC87Q9NVE4 849 aa18.69■□□□□ 0.58
CDK5RAP3-213ENST00000579605 PCNTO95613 3336 aa18.68■□□□□ 0.58
CDK5RAP3-213ENST00000579605 TOGARAM1Q9Y4F4 1720 aa18.68■□□□□ 0.58
CDK5RAP3-213ENST00000579605 RGPD2P0DJD1 1756 aa18.68■□□□□ 0.58
CDK5RAP3-213ENST00000579605 PLEKHG2Q9H7P9 1386 aa18.68■□□□□ 0.58
CDK5RAP3-213ENST00000579605 TAF1LQ8IZX4 1826 aa18.67■□□□□ 0.58
CDK5RAP3-213ENST00000579605 NEUROD1Q13562 356 aa18.67■□□□□ 0.58
CDK5RAP3-213ENST00000579605 TRAPPC3LQ5T215 181 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms