RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	IL16	Q14005	1332 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	CPA1	P15085	419 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	PLCB2	Q00722	1185 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	AAMP	Q13685	434 aa		18.25	■□□□□ 0.51
PRPF8-216	ENST00000577001	UNC5CL	Q8IV45	518 aa		18.24	■□□□□ 0.51
PRPF8-216	ENST00000577001	PALD1	Q9ULE6	856 aa		18.24	■□□□□ 0.51
PRPF8-216	ENST00000577001	DIP2C	Q9Y2E4	1556 aa		18.24	■□□□□ 0.51
PRPF8-216	ENST00000577001	RAB3GAP1	Q15042	981 aa		18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	MYO5B	Q9ULV0	1848 aa		18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	DIP2B	Q9P265	1576 aa		18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	LTK	P29376	864 aa		18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	PHAX	Q9H814	394 aa	Known RBP	18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	MAP3K19	Q56UN5	1328 aa		18.23	■□□□□ 0.51
PRPF8-216	ENST00000577001	PPL	O60437	1756 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	MRE11	P49959	708 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	BCL11B	Q9C0K0	894 aa	Predicted RBP	18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	CALD1	Q05682	793 aa	Known RBP	18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	DCTPP1	Q9H773	170 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	CHMP3	Q9Y3E7	222 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	COL3A1	P02461	1466 aa	Predicted RBP	18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	RIMS2	Q9UQ26	1411 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	LMTK2	Q8IWU2	1503 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	FSD2	A1L4K1	749 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	ZNF853	P0CG23	659 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	USP26	Q9BXU7	913 aa		18.22	■□□□□ 0.51
PRPF8-216	ENST00000577001	LRRFIP2	Q9Y608	721 aa	Known RBP	18.21	■□□□□ 0.51
PRPF8-216	ENST00000577001	ABCC4	O15439	1325 aa		18.21	■□□□□ 0.51
PRPF8-216	ENST00000577001	JARID2	Q92833	1246 aa	Predicted RBP	18.21	■□□□□ 0.51
PRPF8-216	ENST00000577001	TTC21B	Q7Z4L5	1316 aa		18.21	■□□□□ 0.51
PRPF8-216	ENST00000577001	GOLGA6L22	H0YM25	854 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	NASP	P49321	788 aa	Predicted RBP	18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	RBM10	P98175	930 aa	Known RBP	18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	FAM135B	Q49AJ0	1406 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	PIK3C2B	O00750	1634 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	ESPN	B1AK53	854 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	IL25	Q9H293	177 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	CPS1	P31327	1500 aa		18.2	■□□□□ 0.5
PRPF8-216	ENST00000577001	SYCE3	A1L190	88 aa		18.19	■□□□□ 0.5
PRPF8-216	ENST00000577001	ARHGEF28	Q8N1W1	1705 aa	Known RBP	18.19	■□□□□ 0.5
PRPF8-216	ENST00000577001	ANKRD44	Q8N8A2	993 aa		18.19	■□□□□ 0.5
PRPF8-216	ENST00000577001	EYA1	Q99502	592 aa		18.19	■□□□□ 0.5
PRPF8-216	ENST00000577001	STK31	Q9BXU1	1019 aa		18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	KCNQ3	O43525	872 aa		18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	LMOD3	Q0VAK6	560 aa		18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	INTS3	Q68E01	1043 aa	Known RBP	18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	KIAA1210	Q9ULL0	1709 aa		18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	ZC3H13	Q5T200	1668 aa	Known RBP	18.18	■□□□□ 0.5
PRPF8-216	ENST00000577001	PIP4K2A	P48426	406 aa	Predicted RBP	18.17	■□□□□ 0.5
PRPF8-216	ENST00000577001	PRIM1	P49642	420 aa	Known RBP	18.17	■□□□□ 0.5
PRPF8-216	ENST00000577001	PNPLA6	Q8IY17	1366 aa		18.17	■□□□□ 0.5
PRPF8-216	ENST00000577001	PPFIA3	O75145	1194 aa		18.17	■□□□□ 0.5
PRPF8-216	ENST00000577001	SETBP1	Q9Y6X0	1596 aa		18.16	■□□□□ 0.5
PRPF8-216	ENST00000577001	SURF6	O75683	361 aa	Known RBP	18.16	■□□□□ 0.5
PRPF8-216	ENST00000577001	OS9	Q13438	667 aa	Predicted RBP	18.16	■□□□□ 0.5
PRPF8-216	ENST00000577001	SNX21	Q969T3	373 aa		18.16	■□□□□ 0.5
PRPF8-216	ENST00000577001	IFT172	Q9UG01	1749 aa		18.16	■□□□□ 0.5
PRPF8-216	ENST00000577001	ROBO2	Q9HCK4	1378 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	PDE1A	P54750	535 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	AIMP1	Q12904	312 aa	Known RBP	18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	CASC1	Q6TDU7	716 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	SETD1B	Q9UPS6	1966 aa	Known RBP	18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	CHL1	O00533	1208 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	SPG7	Q9UQ90	795 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	ABTB2	Q8N961	1025 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	RBSN	Q9H1K0	784 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	AMOTL2	Q9Y2J4	779 aa		18.15	■□□□□ 0.5
PRPF8-216	ENST00000577001	ARHGEF40	Q8TER5	1519 aa		18.14	■□□□□ 0.49
PRPF8-216	ENST00000577001	ALK	Q9UM73	1620 aa		18.14	■□□□□ 0.49
PRPF8-216	ENST00000577001	LRRC59	Q96AG4	307 aa	Known RBP	18.14	■□□□□ 0.49
PRPF8-216	ENST00000577001	TCEANC2	Q96MN5	208 aa		18.14	■□□□□ 0.49
PRPF8-216	ENST00000577001	FLII	Q13045	1269 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	PUS7	Q96PZ0	661 aa	Known RBP	18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	MAP2	P11137	1827 aa	Known RBP	18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	DDIT3	P35638	169 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	ZNF830	Q96NB3	372 aa	Predicted RBP	18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	RTL1	A6NKG5	1358 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	ARHGAP45	Q92619	1136 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	ZDHHC9	Q9Y397	364 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	MYO3A	Q8NEV4	1616 aa		18.13	■□□□□ 0.49
PRPF8-216	ENST00000577001	ST18	O60284	1047 aa		18.12	■□□□□ 0.49
PRPF8-216	ENST00000577001	ANP32B	Q92688	251 aa	Known RBP	18.12	■□□□□ 0.49
PRPF8-216	ENST00000577001	LGR6	Q9HBX8	967 aa		18.12	■□□□□ 0.49
PRPF8-216	ENST00000577001	RABEP1	Q15276	862 aa		18.12	■□□□□ 0.49
PRPF8-216	ENST00000577001	MPRIP	Q6WCQ1	1025 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	GPT2	Q8TD30	523 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	NEURL4	Q96JN8	1562 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	PRAMEF22	A3QJZ6	481 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	ERC2	O15083	957 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	ZSCAN23	Q3MJ62	389 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	CWC27	Q6UX04	472 aa	Known RBP	18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	TMX3	Q96JJ7	454 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	GNAI2	P04899	355 aa		18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	PA2G4	Q9UQ80	394 aa	Known RBP	18.11	■□□□□ 0.49
PRPF8-216	ENST00000577001	GADD45B	O75293	160 aa	Predicted RBP	18.1	■□□□□ 0.49
PRPF8-216	ENST00000577001	HDGFL1	Q5TGJ6	251 aa		18.1	■□□□□ 0.49
PRPF8-216	ENST00000577001	SIL1	Q9H173	461 aa		18.1	■□□□□ 0.49
PRPF8-216	ENST00000577001	CHMP4B	Q9H444	224 aa	Known RBP	18.1	■□□□□ 0.49
PRPF8-216	ENST00000577001	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	FOSB	P53539	338 aa		18.09	■□□□□ 0.49
PRPF8-216	ENST00000577001	TMEM63C	Q9P1W3	806 aa		18.09	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms