RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 PHF23Q9BUL5 403 aaPredicted RBP15.13■□□□□ 0.01
CIITA-209ENST00000573309 AXIN2Q9Y2T1 843 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 COL3A1P02461 1466 aaPredicted RBP15.13■□□□□ 0.01
CIITA-209ENST00000573309 ZKSCAN2Q63HK3 967 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 TMEM57Q8N5G2 664 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 C19orf44Q9H6X5 657 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 CDC42BPGQ6DT37 1551 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 LRRC7Q96NW7 1537 aa15.12■□□□□ 0.01
CIITA-209ENST00000573309 NLRP2Q9NX02 1062 aa15.12■□□□□ 0.01
CIITA-209ENST00000573309 CHMP5Q9NZZ3 219 aa15.12■□□□□ 0.01
CIITA-209ENST00000573309 SLC4A10Q6U841 1118 aa15.12■□□□□ 0.01
CIITA-209ENST00000573309 DZIP1LQ8IYY4 767 aaKnown RBP15.12■□□□□ 0.01
CIITA-209ENST00000573309 MPRIPQ6WCQ1 1025 aa15.11■□□□□ 0.01
CIITA-209ENST00000573309 EIF2S2P20042 333 aaKnown RBP15.11■□□□□ 0.01
CIITA-209ENST00000573309 TSPYL4Q9UJ04 414 aa15.11■□□□□ 0.01
CIITA-209ENST00000573309 ANXA1P04083 346 aa15.1■□□□□ 0.01
CIITA-209ENST00000573309 CCDC27Q2M243 656 aa15.1■□□□□ 0.01
CIITA-209ENST00000573309 NGEFQ8N5V2 710 aa15.1■□□□□ 0.01
CIITA-209ENST00000573309 GAS2L3Q86XJ1 694 aa15.1■□□□□ 0.01
CIITA-209ENST00000573309 TTC21AQ8NDW8 1320 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 A0A0G2JS52 829 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 MFAP1P55081 439 aaKnown RBP15.09■□□□□ 0.01
CIITA-209ENST00000573309 LGR6Q9HBX8 967 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 F6X3S4 739 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 C22orf23Q9BZE7 217 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 IQSEC2Q5JU85 1478 aa15.09■□□□□ 0.01
CIITA-209ENST00000573309 VAMP4O75379 141 aa15.08■□□□□ 0.01
CIITA-209ENST00000573309 GNAI1P63096 354 aa15.08■□□□□ 0.01
CIITA-209ENST00000573309 PTCH1Q13635 1447 aa15.08■□□□□ 0
CIITA-209ENST00000573309 OVOS2A0A0J9YW53 1432 aa15.08■□□□□ 0
CIITA-209ENST00000573309 OVOS2Q6IE36 1432 aa15.08■□□□□ 0
CIITA-209ENST00000573309 FLT4P35916 1363 aa15.07■□□□□ 0
CIITA-209ENST00000573309 ATF7IPQ6VMQ6 1270 aa15.07■□□□□ 0
CIITA-209ENST00000573309 RWDD1Q9H446 243 aaPredicted RBP15.07■□□□□ 0
CIITA-209ENST00000573309 STRN4Q9NRL3 753 aa15.07■□□□□ 0
CIITA-209ENST00000573309 KCNQ3O43525 872 aa15.07■□□□□ 0
CIITA-209ENST00000573309 ANKRD24Q8TF21 1146 aa15.06■□□□□ 0
CIITA-209ENST00000573309 AATKQ6ZMQ8 1374 aa15.06■□□□□ 0
CIITA-209ENST00000573309 SLC4A2P04920 1241 aa15.05■□□□□ -0
CIITA-209ENST00000573309 G2E3Q7L622 706 aa15.05■□□□□ -0
CIITA-209ENST00000573309 CFAP44Q96MT7 982 aa15.05■□□□□ -0
CIITA-209ENST00000573309 USP32Q8NFA0 1604 aa15.05■□□□□ -0
CIITA-209ENST00000573309 KIF20BQ96Q89 1820 aa15.04■□□□□ -0
CIITA-209ENST00000573309 PIP4K2AP48426 406 aaPredicted RBP15.04■□□□□ -0
CIITA-209ENST00000573309 ZNF530Q6P9A1 599 aaPredicted RBP15.04■□□□□ -0
CIITA-209ENST00000573309 MVPQ14764 893 aaKnown RBP15.04■□□□□ -0
CIITA-209ENST00000573309 IL17REQ8NFR9 667 aa15.04■□□□□ -0
CIITA-209ENST00000573309 SBNO1A3KN83 1393 aa15.04■□□□□ -0
CIITA-209ENST00000573309 DDX11L8A8MPP1 907 aa15.03■□□□□ -0
CIITA-209ENST00000573309 DDIT3P35638 169 aa15.03■□□□□ -0
CIITA-209ENST00000573309 ADAMTSL3P82987 1691 aa15.03■□□□□ -0
CIITA-209ENST00000573309 TRIM44Q96DX7 344 aaPredicted RBP15.03■□□□□ -0
CIITA-209ENST00000573309 ADGRL3Q9HAR2 1447 aa15.03■□□□□ -0
CIITA-209ENST00000573309 IFT57Q9NWB7 429 aa15.02■□□□□ -0
CIITA-209ENST00000573309 CDK12Q9NYV4 1490 aaPredicted RBP15.02■□□□□ -0
CIITA-209ENST00000573309 LMOD3Q0VAK6 560 aa15.02■□□□□ -0
CIITA-209ENST00000573309 SSH2Q76I76 1423 aa15.02□□□□□ -0.01
CIITA-209ENST00000573309 TNPO1Q92973 898 aaKnown RBP15.02□□□□□ -0.01
CIITA-209ENST00000573309 PIP4K2BP78356 416 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 SLC39A6Q13433 755 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 IP6K1Q92551 441 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 PRAMEF22A3QJZ6 481 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 GNAT3A8MTJ3 354 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 HSCBQ8IWL3 235 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 ITSN1Q15811 1721 aa15.01□□□□□ -0.01
CIITA-209ENST00000573309 MRPL50Q8N5N7 158 aaKnown RBP15□□□□□ -0.01
CIITA-209ENST00000573309 LNPKQ9C0E8 428 aa15□□□□□ -0.01
CIITA-209ENST00000573309 PIK3R4Q99570 1358 aa15□□□□□ -0.01
CIITA-209ENST00000573309 TPM2P07951 284 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 KIAA1211Q6ZU35 1233 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 CADPS2Q86UW7 1296 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 USP31Q70CQ4 1352 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 CALD1Q05682 793 aaKnown RBP14.99□□□□□ -0.01
CIITA-209ENST00000573309 NCOA3Q9Y6Q9 1424 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 PRDM11Q9NQV5 511 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 SLAIN2Q9P270 581 aa14.99□□□□□ -0.01
CIITA-209ENST00000573309 IGSF1Q8N6C5 1336 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 IPO8O15397 1037 aaKnown RBP14.98□□□□□ -0.01
CIITA-209ENST00000573309 TEFQ10587 303 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 BRINP3Q76B58 766 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 ARHGEF25Q86VW2 580 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 ISY1Q9ULR0 285 aaKnown RBP14.98□□□□□ -0.01
CIITA-209ENST00000573309 AAMPQ13685 434 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 GAS2L2Q8NHY3 880 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 PDCL3Q9H2J4 239 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 KCNH5Q8NCM2 988 aa14.98□□□□□ -0.01
CIITA-209ENST00000573309 C1orf167Q5SNV9 1468 aa14.97□□□□□ -0.01
CIITA-209ENST00000573309 PEAK1Q9H792 1746 aa14.97□□□□□ -0.01
CIITA-209ENST00000573309 DDX54Q8TDD1 881 aaKnown RBP14.97□□□□□ -0.01
CIITA-209ENST00000573309 MSH6P52701 1360 aa14.97□□□□□ -0.01
CIITA-209ENST00000573309 ZNF853P0CG23 659 aa14.97□□□□□ -0.01
CIITA-209ENST00000573309 AIMP1Q12904 312 aaKnown RBP14.97□□□□□ -0.01
CIITA-209ENST00000573309 FKBP5Q13451 457 aaPredicted RBP14.97□□□□□ -0.01
CIITA-209ENST00000573309 KNDC1Q76NI1 1749 aa14.97□□□□□ -0.01
CIITA-209ENST00000573309 CHL1O00533 1208 aa14.96□□□□□ -0.01
CIITA-209ENST00000573309 NALCNQ8IZF0 1738 aa14.96□□□□□ -0.01
CIITA-209ENST00000573309 FOXD4L1Q9NU39 408 aa14.96□□□□□ -0.01
CIITA-209ENST00000573309 PHAXQ9H814 394 aaKnown RBP14.96□□□□□ -0.01
CIITA-209ENST00000573309 C1orf141Q5JVX7 400 aa14.96□□□□□ -0.02
CIITA-209ENST00000573309 RBM10P98175 930 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms