RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 DHX29Q7Z478 1369 aaKnown RBP18.25■□□□□ 0.51
CIITA-204ENST00000570546 CASTP20810 708 aaKnown RBP18.25■□□□□ 0.51
CIITA-204ENST00000570546 ZSCAN30Q86W11 494 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 ATP10BO94823 1461 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 PDE4CQ08493 712 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 TBC1D9Q6ZT07 1266 aa18.25■□□□□ 0.51
CIITA-204ENST00000570546 RAB11FIP3O75154 756 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 SPATA32Q96LK8 384 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 CEP89Q96ST8 783 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 WDR62O43379 1518 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 SART3Q15020 963 aaKnown RBP18.24■□□□□ 0.51
CIITA-204ENST00000570546 KIF6Q6ZMV9 814 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 UQCRHLA0A096LP55 91 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 FYB1O15117 783 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 UQCRHP07919 91 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 ANKRD36BQ8N2N9 1353 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 FANCAO15360 1455 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 C8orf34Q49A92 452 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 KIF1BPQ96EK5 621 aa18.24■□□□□ 0.51
CIITA-204ENST00000570546 EIF2AK4Q9P2K8 1649 aaKnown RBP18.23■□□□□ 0.51
CIITA-204ENST00000570546 HDAC1Q13547 482 aaPredicted RBP18.23■□□□□ 0.51
CIITA-204ENST00000570546 PPP6R1Q9UPN7 881 aa18.23■□□□□ 0.51
CIITA-204ENST00000570546 ME1P48163 572 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 IDI1Q13907 227 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 NUP62CLQ9H1M0 184 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 PCDHB15Q9Y5E8 787 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 F6X3S4 739 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 CABP4P57796 275 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 SYCP2Q9BX26 1530 aa18.22■□□□□ 0.51
CIITA-204ENST00000570546 UPF3BQ9BZI7 483 aaKnown RBP18.22■□□□□ 0.51
CIITA-204ENST00000570546 RAD21O60216 631 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 SPG7Q9UQ90 795 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 PTPRCP08575 1304 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 WASLO00401 505 aaPredicted RBP18.21■□□□□ 0.51
CIITA-204ENST00000570546 CCP110O43303 1012 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 MBIPQ9NS73 344 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 KDM5BQ9UGL1 1544 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 ARHGEF12Q9NZN5 1544 aa18.21■□□□□ 0.51
CIITA-204ENST00000570546 NUCB1Q02818 461 aa18.2■□□□□ 0.5
CIITA-204ENST00000570546 PROSER2Q86WR7 435 aaPredicted RBP18.2■□□□□ 0.5
CIITA-204ENST00000570546 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.2■□□□□ 0.5
CIITA-204ENST00000570546 KIAA0556O60303 1618 aa18.2■□□□□ 0.5
CIITA-204ENST00000570546 KRT32Q14532 448 aa18.2■□□□□ 0.5
CIITA-204ENST00000570546 PLEKHH1Q9ULM0 1364 aa18.2■□□□□ 0.5
CIITA-204ENST00000570546 TESK2Q96S53 571 aa18.2■□□□□ 0.5
CIITA-204ENST00000570546 GLRX3O76003 335 aaKnown RBP18.19■□□□□ 0.5
CIITA-204ENST00000570546 ATP2B1P20020 1258 aa18.19■□□□□ 0.5
CIITA-204ENST00000570546 CNNM1Q9NRU3 951 aa18.19■□□□□ 0.5
CIITA-204ENST00000570546 CCDC83Q8IWF9 413 aa18.19■□□□□ 0.5
CIITA-204ENST00000570546 JMYQ8N9B5 988 aa18.19■□□□□ 0.5
CIITA-204ENST00000570546 PDIA4P13667 645 aaKnown RBP18.19■□□□□ 0.5
CIITA-204ENST00000570546 CFAP45Q9UL16 551 aa18.19■□□□□ 0.5
CIITA-204ENST00000570546 TAF7Q15545 349 aaPredicted RBP18.18■□□□□ 0.5
CIITA-204ENST00000570546 RRP12Q5JTH9 1297 aaKnown RBP18.18■□□□□ 0.5
CIITA-204ENST00000570546 PRPF40BQ6NWY9 871 aaKnown RBP18.18■□□□□ 0.5
CIITA-204ENST00000570546 RBM42Q9BTD8 480 aaKnown RBP18.18■□□□□ 0.5
CIITA-204ENST00000570546 TTC22Q5TAA0 569 aa18.17■□□□□ 0.5
CIITA-204ENST00000570546 LRRFIP2Q9Y608 721 aaKnown RBP18.17■□□□□ 0.5
CIITA-204ENST00000570546 DNMT1P26358 1616 aaKnown RBP18.17■□□□□ 0.5
CIITA-204ENST00000570546 PZPP20742 1482 aa18.17■□□□□ 0.5
CIITA-204ENST00000570546 FBXO31Q5XUX0 539 aaPredicted RBP18.17■□□□□ 0.5
CIITA-204ENST00000570546 ACBD3Q9H3P7 528 aa18.17■□□□□ 0.5
CIITA-204ENST00000570546 POLR3AO14802 1390 aaPredicted RBP18.17■□□□□ 0.5
CIITA-204ENST00000570546 TRIM34Q9BYJ4 488 aa18.17■□□□□ 0.5
CIITA-204ENST00000570546 SETQ01105 290 aaPredicted RBP18.17■□□□□ 0.5
CIITA-204ENST00000570546 SERPINC1P01008 464 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 MAP3K11Q16584 847 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 PLCH2O75038 1416 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 CCDC183Q5T5S1 534 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 CCDC112Q8NEF3 446 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 FAM177BA6PVY3 158 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 RRP9O43818 475 aaKnown RBP18.16■□□□□ 0.5
CIITA-204ENST00000570546 PIK3C2GO75747 1445 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 ADAMTS12P58397 1594 aa18.16■□□□□ 0.5
CIITA-204ENST00000570546 DHX8Q14562 1220 aaKnown RBP18.15■□□□□ 0.5
CIITA-204ENST00000570546 SHANK2Q9UPX8 1470 aa18.15■□□□□ 0.5
CIITA-204ENST00000570546 FAM83GA6ND36 823 aa18.15■□□□□ 0.5
CIITA-204ENST00000570546 FKBP4Q02790 459 aaKnown RBP eCLIP18.15■□□□□ 0.5
CIITA-204ENST00000570546 ARHGAP45Q92619 1136 aa18.15■□□□□ 0.5
CIITA-204ENST00000570546 RBM33Q96EV2 1170 aaKnown RBP18.14■□□□□ 0.5
CIITA-204ENST00000570546 CCDC57Q2TAC2 916 aa18.14■□□□□ 0.49
CIITA-204ENST00000570546 FILIP1LQ4L180 1135 aa18.14■□□□□ 0.49
CIITA-204ENST00000570546 BAG4O95429 457 aaKnown RBP18.14■□□□□ 0.49
CIITA-204ENST00000570546 HSP90B2PQ58FF3 399 aa18.14■□□□□ 0.49
CIITA-204ENST00000570546 CAMK4Q16566 473 aa18.14■□□□□ 0.49
CIITA-204ENST00000570546 NAP1L1P55209 391 aaKnown RBP18.13■□□□□ 0.49
CIITA-204ENST00000570546 TTLL5Q6EMB2 1281 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 FERMT3Q86UX7 667 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 FLIIQ13045 1269 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 CEP57L1Q8IYX8 460 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 SH2B1Q9NRF2 756 aaPredicted RBP18.13■□□□□ 0.49
CIITA-204ENST00000570546 CTNNA3Q9UI47 895 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 DDX11Q96FC9 970 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 ZSCAN25Q6NSZ9 544 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 USHBP1Q8N6Y0 703 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 KCNH5Q8NCM2 988 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 SMARCE1Q969G3 411 aa18.13■□□□□ 0.49
CIITA-204ENST00000570546 PER1O15534 1290 aaPredicted RBP18.12■□□□□ 0.49
CIITA-204ENST00000570546 COL17A1Q9UMD9 1497 aaPredicted RBP18.12■□□□□ 0.49
CIITA-204ENST00000570546 UHRF1BP1Q6BDS2 1440 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms