RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NME9Q86XW9 330 aa15.83■□□□□ 0.12
VPS53-207ENST00000570510 ADCY9O60503 1353 aa15.83■□□□□ 0.12
VPS53-207ENST00000570510 KIF3CO14782 793 aa15.82■□□□□ 0.12
VPS53-207ENST00000570510 HDGFL2Q7Z4V5 671 aaPredicted RBP15.82■□□□□ 0.12
VPS53-207ENST00000570510 ZCRB1Q8TBF4 217 aaKnown RBP15.82■□□□□ 0.12
VPS53-207ENST00000570510 TMC1Q8TDI8 760 aa15.82■□□□□ 0.12
VPS53-207ENST00000570510 IGSF1Q8N6C5 1336 aa15.82■□□□□ 0.12
VPS53-207ENST00000570510 TOMM70O94826 608 aa15.81■□□□□ 0.12
VPS53-207ENST00000570510 COL24A1Q17RW2 1714 aa15.81■□□□□ 0.12
VPS53-207ENST00000570510 USP31Q70CQ4 1352 aa15.8■□□□□ 0.12
VPS53-207ENST00000570510 C16orf71Q8IYS4 520 aaPredicted RBP15.79■□□□□ 0.12
VPS53-207ENST00000570510 IP6K1Q92551 441 aa15.79■□□□□ 0.12
VPS53-207ENST00000570510 AK7Q96M32 723 aa15.79■□□□□ 0.12
VPS53-207ENST00000570510 TUBGCP6Q96RT7 1819 aa15.78■□□□□ 0.12
VPS53-207ENST00000570510 PHF14O94880 888 aa15.77■□□□□ 0.12
VPS53-207ENST00000570510 AMPHP49418 695 aa15.77■□□□□ 0.12
VPS53-207ENST00000570510 DNAJC5GQ8N7S2 189 aa15.77■□□□□ 0.12
VPS53-207ENST00000570510 TNS4Q8IZW8 715 aa15.76■□□□□ 0.11
VPS53-207ENST00000570510 ROCK2O75116 1388 aaKnown RBP15.75■□□□□ 0.11
VPS53-207ENST00000570510 NSD2O96028 1365 aa15.75■□□□□ 0.11
VPS53-207ENST00000570510 COL13A1Q5TAT6 717 aaPredicted RBP15.75■□□□□ 0.11
VPS53-207ENST00000570510 TERF2IPQ9NYB0 399 aa15.75■□□□□ 0.11
VPS53-207ENST00000570510 LTN1O94822 1766 aa15.75■□□□□ 0.11
VPS53-207ENST00000570510 MPRIPQ6WCQ1 1025 aa15.74■□□□□ 0.11
VPS53-207ENST00000570510 RAPGEF4Q8WZA2 1011 aa15.74■□□□□ 0.11
VPS53-207ENST00000570510 LY75O60449 1722 aa15.73■□□□□ 0.11
VPS53-207ENST00000570510 DOT1LQ8TEK3 1739 aa15.73■□□□□ 0.11
VPS53-207ENST00000570510 ARHGAP27Q6ZUM4 889 aa15.72■□□□□ 0.11
VPS53-207ENST00000570510 SMARCC1Q92922 1105 aaPredicted RBP15.72■□□□□ 0.11
VPS53-207ENST00000570510 KLRG1Q96E93 195 aa15.72■□□□□ 0.11
VPS53-207ENST00000570510 BCS1LQ9Y276 419 aa15.72■□□□□ 0.11
VPS53-207ENST00000570510 PALLDQ8WX93 1383 aa15.72■□□□□ 0.11
VPS53-207ENST00000570510 SBNO2Q9Y2G9 1366 aa15.72■□□□□ 0.11
VPS53-207ENST00000570510 CGNL1Q0VF96 1302 aa15.71■□□□□ 0.11
VPS53-207ENST00000570510 NSD3Q9BZ95 1437 aa15.71■□□□□ 0.11
VPS53-207ENST00000570510 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.71■□□□□ 0.11
VPS53-207ENST00000570510 TATP17735 454 aaPredicted RBP15.71■□□□□ 0.11
VPS53-207ENST00000570510 L3MBTL2Q969R5 705 aa15.71■□□□□ 0.11
VPS53-207ENST00000570510 COG3Q96JB2 828 aa15.71■□□□□ 0.11
VPS53-207ENST00000570510 EDC4Q6P2E9 1401 aaKnown RBP15.7■□□□□ 0.1
VPS53-207ENST00000570510 HOXC9P31274 260 aa15.7■□□□□ 0.1
VPS53-207ENST00000570510 PRELPP51888 382 aa15.7■□□□□ 0.1
VPS53-207ENST00000570510 SLC12A5Q9H2X9 1139 aa15.7■□□□□ 0.1
VPS53-207ENST00000570510 NMRK2Q9NPI5 230 aa15.7■□□□□ 0.1
VPS53-207ENST00000570510 RBM46Q8TBY0 533 aaKnown RBP15.69■□□□□ 0.1
VPS53-207ENST00000570510 SSFA2P28290 1259 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 HTRA3P83110 453 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 MON2Q7Z3U7 1717 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 MAP3K19Q56UN5 1328 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 PCDH11XQ9BZA7 1347 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 PCDH11YQ9BZA8 1340 aa15.68■□□□□ 0.1
VPS53-207ENST00000570510 FAM208AQ9UK61 1670 aaKnown RBP15.67■□□□□ 0.1
VPS53-207ENST00000570510 FSTL1Q12841 308 aa15.67■□□□□ 0.1
VPS53-207ENST00000570510 USHBP1Q8N6Y0 703 aa15.67■□□□□ 0.1
VPS53-207ENST00000570510 MEGF6O75095 1541 aa15.67■□□□□ 0.1
VPS53-207ENST00000570510 SMG6Q86US8 1419 aaKnown RBP15.67■□□□□ 0.1
VPS53-207ENST00000570510 C5P01031 1676 aa15.67■□□□□ 0.1
VPS53-207ENST00000570510 TGFB2P61812 414 aa15.66■□□□□ 0.1
VPS53-207ENST00000570510 SMIM5Q71RC9 77 aa15.66■□□□□ 0.1
VPS53-207ENST00000570510 JMYQ8N9B5 988 aa15.66■□□□□ 0.1
VPS53-207ENST00000570510 A0A0G2JLW4 131 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 FCHSD2O94868 740 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 MMP10P09238 476 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 NBPF6Q5VWK0 638 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 NBPF4Q96M43 638 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 KDM2BQ8NHM5 1336 aa15.65■□□□□ 0.1
VPS53-207ENST00000570510 USP54Q70EL1 1684 aa15.64■□□□□ 0.09
VPS53-207ENST00000570510 GNPATO15228 680 aa15.64■□□□□ 0.09
VPS53-207ENST00000570510 A0A1W2PP64 1363 aa15.63■□□□□ 0.09
VPS53-207ENST00000570510 FBLN1P23142 703 aa15.63■□□□□ 0.09
VPS53-207ENST00000570510 C9orf131Q5VYM1 1079 aa15.63■□□□□ 0.09
VPS53-207ENST00000570510 AMIGO3Q86WK7 504 aa15.63■□□□□ 0.09
VPS53-207ENST00000570510 CD163L1Q9NR16 1453 aa15.63■□□□□ 0.09
VPS53-207ENST00000570510 NEUROD1Q13562 356 aa15.62■□□□□ 0.09
VPS53-207ENST00000570510 CARD11Q9BXL7 1154 aa15.62■□□□□ 0.09
VPS53-207ENST00000570510 C4BP0C0L5 1744 aa15.62■□□□□ 0.09
VPS53-207ENST00000570510 WDR90Q96KV7 1748 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 LOC102724428A0A0B4J2F2 783 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 SIK1P57059 783 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 RRS1Q15050 365 aaKnown RBP15.61■□□□□ 0.09
VPS53-207ENST00000570510 NLGN1Q8N2Q7 840 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 CCDC87Q9NVE4 849 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 PLEKHG2Q9H7P9 1386 aa15.61■□□□□ 0.09
VPS53-207ENST00000570510 ATP6V1AP38606 617 aa15.6■□□□□ 0.09
VPS53-207ENST00000570510 TMF1P82094 1093 aa15.6■□□□□ 0.09
VPS53-207ENST00000570510 SMC1BQ8NDV3 1235 aa15.6■□□□□ 0.09
VPS53-207ENST00000570510 PIGBQ92521 554 aa15.6■□□□□ 0.09
VPS53-207ENST00000570510 RRAGCQ9HB90 399 aa15.6■□□□□ 0.09
VPS53-207ENST00000570510 DPEP1P16444 411 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 TRAPPC3LQ5T215 181 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 LINC00116Q8NCU8 138 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 TMOD3Q9NYL9 352 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 PARP3Q9Y6F1 533 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 RTL1A6NKG5 1358 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 PXDNLA1KZ92 1463 aa15.59■□□□□ 0.09
VPS53-207ENST00000570510 CICQ96RK0 1608 aaPredicted RBP15.58■□□□□ 0.09
VPS53-207ENST00000570510 RNF181Q9P0P0 153 aa15.58■□□□□ 0.08
VPS53-207ENST00000570510 RTCBQ9Y3I0 505 aaKnown RBP15.58■□□□□ 0.08
VPS53-207ENST00000570510 TAF1LQ8IZX4 1826 aa15.57■□□□□ 0.08
VPS53-207ENST00000570510 CYP27B1O15528 508 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms