RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 SPDYE2Q495Y8 402 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 NHSQ6T4R5 1651 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 ANKRD26Q9UPS8 1709 aa6.67□□□□□ -1.34
CLK3-219ENST00000567805 EZH2Q15910 746 aaKnown RBP6.66□□□□□ -1.34
CLK3-219ENST00000567805 ANKRD24Q8TF21 1146 aa6.66□□□□□ -1.34
CLK3-219ENST00000567805 IP6K1Q92551 441 aa6.66□□□□□ -1.34
CLK3-219ENST00000567805 CAMKK2Q96RR4 588 aa6.66□□□□□ -1.34
CLK3-219ENST00000567805 MAP2P11137 1827 aaKnown RBP6.66□□□□□ -1.34
CLK3-219ENST00000567805 RTL1A6NKG5 1358 aa6.66□□□□□ -1.34
CLK3-219ENST00000567805 SHANK3Q9BYB0 1731 aa6.65□□□□□ -1.34
CLK3-219ENST00000567805 EXOC5O00471 708 aa6.65□□□□□ -1.34
CLK3-219ENST00000567805 FYB1O15117 783 aa6.65□□□□□ -1.34
CLK3-219ENST00000567805 IL2RBP14784 551 aa6.65□□□□□ -1.34
CLK3-219ENST00000567805 EIF4G2P78344 907 aaKnown RBP eCLIP6.65□□□□□ -1.34
CLK3-219ENST00000567805 MARCH10Q8NA82 808 aaPredicted RBP6.65□□□□□ -1.34
CLK3-219ENST00000567805 NLRP2Q9NX02 1062 aa6.65□□□□□ -1.34
CLK3-219ENST00000567805 MAP3K19Q56UN5 1328 aa6.65□□□□□ -1.35
CLK3-219ENST00000567805 NSD3Q9BZ95 1437 aa6.65□□□□□ -1.35
CLK3-219ENST00000567805 BTAF1O14981 1849 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 KAT6BQ8WYB5 2073 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 PLSCR1O15162 318 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 HOXC9P31274 260 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 AMPHP49418 695 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 BCL11BQ9C0K0 894 aaPredicted RBP6.64□□□□□ -1.35
CLK3-219ENST00000567805 GGNBP2Q9H3C7 697 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 KIF24Q5T7B8 1368 aa6.64□□□□□ -1.35
CLK3-219ENST00000567805 SMG6Q86US8 1419 aaKnown RBP6.64□□□□□ -1.35
CLK3-219ENST00000567805 PSDA5PKW4 1024 aaPredicted RBP6.63□□□□□ -1.35
CLK3-219ENST00000567805 POTEIP0CG38 1075 aa6.63□□□□□ -1.35
CLK3-219ENST00000567805 FBLN1P23142 703 aa6.63□□□□□ -1.35
CLK3-219ENST00000567805 RRS1Q15050 365 aaKnown RBP6.63□□□□□ -1.35
CLK3-219ENST00000567805 CHADLQ6NUI6 762 aa6.63□□□□□ -1.35
CLK3-219ENST00000567805 SPDYE1Q8NFV5 336 aaPredicted RBP6.63□□□□□ -1.35
CLK3-219ENST00000567805 DOT1LQ8TEK3 1739 aa6.63□□□□□ -1.35
CLK3-219ENST00000567805 LTV1Q96GA3 475 aaPredicted RBP6.63□□□□□ -1.35
CLK3-219ENST00000567805 CARD14Q9BXL6 1004 aa6.63□□□□□ -1.35
CLK3-219ENST00000567805 INSRP06213 1382 aa6.62□□□□□ -1.35
CLK3-219ENST00000567805 FLT4P35916 1363 aa6.62□□□□□ -1.35
CLK3-219ENST00000567805 CGNL1Q0VF96 1302 aa6.62□□□□□ -1.35
CLK3-219ENST00000567805 HSPA5P11021 654 aaKnown RBP6.62□□□□□ -1.35
CLK3-219ENST00000567805 R3HDM1Q15032 1099 aaKnown RBP6.62□□□□□ -1.35
CLK3-219ENST00000567805 NBPF14Q5TI25 921 aa6.62□□□□□ -1.35
CLK3-219ENST00000567805 CASZ1Q86V15 1759 aa6.62□□□□□ -1.35
CLK3-219ENST00000567805 MEGF6O75095 1541 aa6.61□□□□□ -1.35
CLK3-219ENST00000567805 PTF1AQ7RTS3 328 aa6.61□□□□□ -1.35
CLK3-219ENST00000567805 POLR3GLQ9BT43 218 aa6.61□□□□□ -1.35
CLK3-219ENST00000567805 RTN4Q9NQC3 1192 aaKnown RBP6.61□□□□□ -1.35
CLK3-219ENST00000567805 PKD1L3Q7Z443 1732 aa6.61□□□□□ -1.35
CLK3-219ENST00000567805 LY75O60449 1722 aa6.6□□□□□ -1.35
CLK3-219ENST00000567805 QSER1Q2KHR3 1735 aa6.6□□□□□ -1.35
CLK3-219ENST00000567805 HSP90AB2PQ58FF8 381 aa6.6□□□□□ -1.35
CLK3-219ENST00000567805 PAPPAQ13219 1627 aa6.6□□□□□ -1.35
CLK3-219ENST00000567805 NSD2O96028 1365 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 KCNQ2O43526 872 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 TXNRD1Q16881 649 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 NBPF6Q5VWK0 638 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 PROM2Q8N271 834 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 ZCRB1Q8TBF4 217 aaKnown RBP6.59□□□□□ -1.35
CLK3-219ENST00000567805 DDX54Q8TDD1 881 aaKnown RBP6.59□□□□□ -1.35
CLK3-219ENST00000567805 RAPGEF4Q8WZA2 1011 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 ACSBG1Q96GR2 724 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 NBPF4Q96M43 638 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 EMILIN1Q9Y6C2 1016 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 ITGB4P16144 1822 aa6.59□□□□□ -1.35
CLK3-219ENST00000567805 NCAPD2Q15021 1401 aa6.59□□□□□ -1.36
CLK3-219ENST00000567805 WASHC2AQ641Q2 1341 aa6.58□□□□□ -1.36
CLK3-219ENST00000567805 PPM1GO15355 546 aaPredicted RBP6.58□□□□□ -1.36
CLK3-219ENST00000567805 TATP17735 454 aaPredicted RBP6.58□□□□□ -1.36
CLK3-219ENST00000567805 USHBP1Q8N6Y0 703 aa6.58□□□□□ -1.36
CLK3-219ENST00000567805 PANK3Q9H999 370 aa6.58□□□□□ -1.36
CLK3-219ENST00000567805 TOGARAM1Q9Y4F4 1720 aa6.58□□□□□ -1.36
CLK3-219ENST00000567805 TUBGCP6Q96RT7 1819 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 PCDH11XQ9BZA7 1347 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 PCDH11YQ9BZA8 1340 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 MKRN4PQ13434 485 aaPredicted RBP6.57□□□□□ -1.36
CLK3-219ENST00000567805 ANO8Q9HCE9 1232 aaPredicted RBP6.57□□□□□ -1.36
CLK3-219ENST00000567805 POLKQ9UBT6 870 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 TAF1LQ8IZX4 1826 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 PLEKHG2Q9H7P9 1386 aa6.57□□□□□ -1.36
CLK3-219ENST00000567805 KIF7Q2M1P5 1343 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 C5P01031 1676 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 TNNT2P45379 298 aaPredicted RBP6.56□□□□□ -1.36
CLK3-219ENST00000567805 SLC15A2Q16348 729 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 SYTL4Q96C24 671 aaPredicted RBP6.56□□□□□ -1.36
CLK3-219ENST00000567805 SPON1Q9HCB6 807 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 STK32BQ9NY57 414 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 SSUH2Q9Y2M2 353 aa6.56□□□□□ -1.36
CLK3-219ENST00000567805 PRIM1P49642 420 aaKnown RBP6.55□□□□□ -1.36
CLK3-219ENST00000567805 SLC27A3Q5K4L6 730 aa6.55□□□□□ -1.36
CLK3-219ENST00000567805 SPG7Q9UQ90 795 aa6.55□□□□□ -1.36
CLK3-219ENST00000567805 KNSTRNQ9Y448 316 aa6.55□□□□□ -1.36
CLK3-219ENST00000567805 COL24A1Q17RW2 1714 aa6.55□□□□□ -1.36
CLK3-219ENST00000567805 VIRMAQ69YN4 1812 aaKnown RBP6.55□□□□□ -1.36
CLK3-219ENST00000567805 UTRNP46939 3433 aa6.54□□□□□ -1.36
CLK3-219ENST00000567805 CYP27B1O15528 508 aa6.54□□□□□ -1.36
CLK3-219ENST00000567805 EIF4A2Q14240 407 aaKnown RBP6.54□□□□□ -1.36
CLK3-219ENST00000567805 MORC1Q86VD1 984 aa6.54□□□□□ -1.36
CLK3-219ENST00000567805 EYA1Q99502 592 aa6.54□□□□□ -1.36
CLK3-219ENST00000567805 LRRC4BQ9NT99 713 aa6.54□□□□□ -1.36
CLK3-219ENST00000567805 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms