RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PI4KAP1Q8N8J0 262 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 GNAI2P04899 355 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 SIRT1Q96EB6 747 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 AKAP4Q5JQC9 854 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 IL1RAPL2Q9NP60 686 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 DIAPH3Q9NSV4 1193 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 IFT57Q9NWB7 429 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 ZNF652Q9Y2D9 606 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 ARHGEF10O15013 1369 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 A0A087WZG4 1122 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 WASHC4Q2M389 1173 aa11.38□□□□□ -0.59
VPS39-205ENST00000562258 APBA3O96018 575 aa11.37□□□□□ -0.59
VPS39-205ENST00000562258 KCNQ4P56696 695 aa11.37□□□□□ -0.59
VPS39-205ENST00000562258 COPS6Q7L5N1 327 aa11.37□□□□□ -0.59
VPS39-205ENST00000562258 NOL10Q9BSC4 688 aaKnown RBP11.37□□□□□ -0.59
VPS39-205ENST00000562258 PTPRMP28827 1452 aa11.37□□□□□ -0.59
VPS39-205ENST00000562258 DNAJC2Q99543 621 aaKnown RBP11.37□□□□□ -0.59
VPS39-205ENST00000562258 PTPRTO14522 1441 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 HSP90B1P14625 803 aaKnown RBP11.36□□□□□ -0.59
VPS39-205ENST00000562258 TMEM57Q8N5G2 664 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 HSPA1LP34931 641 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 FLIIQ13045 1269 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 C8orf58Q8NAV2 365 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 ZNF622Q969S3 477 aaKnown RBP eCLIP11.36□□□□□ -0.597e-7■■■□□ 14.8
VPS39-205ENST00000562258 DDRGK1Q96HY6 314 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 CHPF2Q9P2E5 772 aa11.36□□□□□ -0.59
VPS39-205ENST00000562258 UBE3BQ7Z3V4 1068 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 XAGE3Q8WTP9 111 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 DCAF5Q96JK2 942 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 EXOC6BQ9Y2D4 811 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 CCT4P50991 539 aaKnown RBP11.35□□□□□ -0.59
VPS39-205ENST00000562258 ARHGAP31Q2M1Z3 1444 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 EDC4Q6P2E9 1401 aaKnown RBP11.35□□□□□ -0.59
VPS39-205ENST00000562258 GNPATO15228 680 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 MTMR7Q9Y216 660 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 ADGBQ8N7X0 1667 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 HSP90AB4PQ58FF6 505 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 CCDC24Q8N4L8 307 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 FOXD4L1Q9NU39 408 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 CCNL1Q9UK58 526 aaPredicted RBP11.35□□□□□ -0.59
VPS39-205ENST00000562258 MAP3K2Q9Y2U5 619 aa11.35□□□□□ -0.59
VPS39-205ENST00000562258 ANKRD13DQ6ZTN6 518 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 DNAAF4Q8WXU2 420 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 CEP126Q9P2H0 1117 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 IL13P35225 146 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 STK11IPQ8N1F8 1099 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 TSPYL6Q8N831 410 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 TRPC5Q9UL62 973 aaPredicted RBP11.34□□□□□ -0.59
VPS39-205ENST00000562258 ASXL1Q8IXJ9 1541 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 CENPQQ7L2Z9 268 aaPredicted RBP11.34□□□□□ -0.59
VPS39-205ENST00000562258 NBPF5PQ86XG9 351 aaPredicted RBP11.34□□□□□ -0.59
VPS39-205ENST00000562258 SMARCC1Q92922 1105 aaPredicted RBP11.34□□□□□ -0.59
VPS39-205ENST00000562258 TRIM34Q9BYJ4 488 aa11.34□□□□□ -0.59
VPS39-205ENST00000562258 TRIM37O94972 964 aa11.33□□□□□ -0.6
VPS39-205ENST00000562258 RARSP54136 660 aaKnown RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 NCBP3Q53F19 620 aaKnown RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 C20orf194Q5TEA3 1177 aa11.33□□□□□ -0.6
VPS39-205ENST00000562258 SETD1BQ9UPS6 1966 aaKnown RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 RXRBP28702 533 aa11.33□□□□□ -0.6
VPS39-205ENST00000562258 CHAF1AQ13111 956 aaPredicted RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 ARHGEF25Q86VW2 580 aa11.33□□□□□ -0.6
VPS39-205ENST00000562258 TEX13AQ9BXU3 409 aaPredicted RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 ANO2Q9NQ90 1003 aa11.33□□□□□ -0.6
VPS39-205ENST00000562258 RTCBQ9Y3I0 505 aaKnown RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 RNMTO43148 476 aaKnown RBP11.33□□□□□ -0.6
VPS39-205ENST00000562258 RBM5P52756 815 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS39-205ENST00000562258 FKBP4Q02790 459 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS39-205ENST00000562258 EIF5BO60841 1220 aaKnown RBP11.32□□□□□ -0.6
VPS39-205ENST00000562258 MAP4K4O95819 1239 aaPredicted RBP11.32□□□□□ -0.6
VPS39-205ENST00000562258 A1BGP04217 495 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 NBPF14Q5TI25 921 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 HYPKQ9NX55 129 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 ANKIB1Q9P2G1 1089 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 ABCF2Q9UG63 623 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 PCDH11XQ9BZA7 1347 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 PCDH11YQ9BZA8 1340 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 C6orf229H3BNL8 230 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 IGHMBP2P38935 993 aaKnown RBP11.32□□□□□ -0.6
VPS39-205ENST00000562258 GNL2Q13823 731 aaKnown RBP11.32□□□□□ -0.6
VPS39-205ENST00000562258 RSPH6AQ9H0K4 717 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 NIP7Q9Y221 180 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS39-205ENST00000562258 DIP2CQ9Y2E4 1556 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 SBNO1A3KN83 1393 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 PIK3C2GO75747 1445 aa11.32□□□□□ -0.6
VPS39-205ENST00000562258 HSCBQ8IWL3 235 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 DNAJC10Q8IXB1 793 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 METTL24Q5JXM2 366 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 RPGRQ92834 1020 aaKnown RBP11.31□□□□□ -0.6
VPS39-205ENST00000562258 SETDB2Q96T68 719 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 SLKQ9H2G2 1235 aaPredicted RBP11.31□□□□□ -0.6
VPS39-205ENST00000562258 EIF2AK4Q9P2K8 1649 aaKnown RBP11.31□□□□□ -0.6
VPS39-205ENST00000562258 MAP3K4Q9Y6R4 1608 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 CHMP4CQ96CF2 233 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 FSD1Q9BTV5 496 aa11.31□□□□□ -0.6
VPS39-205ENST00000562258 ERICH6BQ5W0A0 696 aa11.3□□□□□ -0.6
VPS39-205ENST00000562258 DZIP3Q86Y13 1208 aaKnown RBP11.3□□□□□ -0.6
VPS39-205ENST00000562258 PDE3AQ14432 1141 aa11.3□□□□□ -0.6
VPS39-205ENST00000562258 ZNF790Q6PG37 636 aa11.3□□□□□ -0.6
VPS39-205ENST00000562258 MVPQ14764 893 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 587.1 ms