RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 IVLP07476 585 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 WWC2Q6AWC2 1192 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.09□□□□□ -0.79
USP3-211ENST00000559257 KIAA1524Q8TCG1 905 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 PIK3R5Q8WYR1 880 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 MIEF2Q96C03 454 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 PSD3Q9NYI0 1048 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 FMN1Q68DA7 1419 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 MIA2Q96PC5 1412 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 PLEKHH1Q9ULM0 1364 aa10.08□□□□□ -0.8
USP3-211ENST00000559257 KINO60870 393 aaKnown RBP10.08□□□□□ -0.8
USP3-211ENST00000559257 RWDD2BP57060 319 aa10.08□□□□□ -0.8
USP3-211ENST00000559257 NUTM1Q86Y26 1132 aa10.08□□□□□ -0.8
USP3-211ENST00000559257 SH3GL3Q99963 347 aa10.08□□□□□ -0.8
USP3-211ENST00000559257 A1CFQ9NQ94 594 aaKnown RBP10.08□□□□□ -0.8
USP3-211ENST00000559257 IRAK4Q9NWZ3 460 aa10.08□□□□□ -0.8
USP3-211ENST00000559257 USP8P40818 1118 aa10.07□□□□□ -0.8
USP3-211ENST00000559257 ICA1Q05084 483 aa10.07□□□□□ -0.8
USP3-211ENST00000559257 KMT5BQ4FZB7 885 aa10.07□□□□□ -0.8
USP3-211ENST00000559257 BAG4O95429 457 aaKnown RBP10.07□□□□□ -0.8
USP3-211ENST00000559257 SF3A1Q15459 793 aaKnown RBP10.07□□□□□ -0.8
USP3-211ENST00000559257 CAVIN1Q6NZI2 390 aaKnown RBP10.07□□□□□ -0.8
USP3-211ENST00000559257 NLRP13Q86W25 1043 aa10.07□□□□□ -0.8
USP3-211ENST00000559257 YEATS2Q9ULM3 1422 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 CGNL1Q0VF96 1302 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 GOLGA6CA6NDK9 693 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 GOLGA6BA6NDN3 693 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 HTATSF1O43719 755 aaKnown RBP10.06□□□□□ -0.8
USP3-211ENST00000559257 GOLGA6DP0CG33 693 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 PDCD2Q16342 344 aaPredicted RBP10.06□□□□□ -0.8
USP3-211ENST00000559257 CCDC30Q5VVM6 783 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 FAM177A1Q8N128 213 aaPredicted RBP10.06□□□□□ -0.8
USP3-211ENST00000559257 NEK11Q8NG66 645 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 CCDC26Q8TAB7 109 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 C22orf23Q9BZE7 217 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 GOLGA6AQ9NYA3 693 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 PTPRCP08575 1304 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 IL16Q14005 1332 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 FAM163BP0C2L3 166 aa10.06□□□□□ -0.8
USP3-211ENST00000559257 SPTY2D1Q68D10 685 aaPredicted RBP10.06□□□□□ -0.8
USP3-211ENST00000559257 HDGFL1Q5TGJ6 251 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 NAIF1Q69YI7 327 aaPredicted RBP10.05□□□□□ -0.8
USP3-211ENST00000559257 TTC19Q6DKK2 380 aaPredicted RBP10.05□□□□□ -0.8
USP3-211ENST00000559257 CCDC186Q7Z3E2 898 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 ZNF428Q96B54 188 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 TMX4Q9H1E5 349 aaPredicted RBP10.05□□□□□ -0.8
USP3-211ENST00000559257 GRIK3Q13003 919 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 CDC37Q16543 378 aaPredicted RBP10.05□□□□□ -0.8
USP3-211ENST00000559257 TRIM74Q86UV6 250 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 TRIM73Q86UV7 250 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 TEX11Q8IYF3 940 aa10.05□□□□□ -0.8
USP3-211ENST00000559257 RANBP17Q9H2T7 1088 aaKnown RBP10.05□□□□□ -0.8
USP3-211ENST00000559257 MTUS2Q5JR59 1369 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 KDM4AO75164 1064 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 CORO7P57737 925 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 ZRSR1Q15695 479 aaKnown RBP10.04□□□□□ -0.8
USP3-211ENST00000559257 AMOTQ4VCS5 1084 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 EFCAB13Q8IY85 973 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 AK7Q96M32 723 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 LARP6Q9BRS8 491 aaKnown RBP10.04□□□□□ -0.8
USP3-211ENST00000559257 ZSCAN16Q9H4T2 348 aaPredicted RBP10.04□□□□□ -0.8
USP3-211ENST00000559257 VEZTQ9HBM0 779 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 ST7Q9NRC1 585 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 CPSF2Q9P2I0 782 aaKnown RBP10.04□□□□□ -0.8
USP3-211ENST00000559257 PHF8Q9UPP1 1060 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 TBC1D2BQ9UPU7 963 aa10.04□□□□□ -0.8
USP3-211ENST00000559257 RPS6KA5O75582 802 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 SLC5A9Q2M3M2 681 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 MAF1Q9H063 256 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 LMBRD1Q9NUN5 540 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 TRAK1Q9UPV9 953 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 FANCD2Q9BXW9 1451 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 KIF7Q2M1P5 1343 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 KIF2AO00139 706 aaPredicted RBP10.03□□□□□ -0.8
USP3-211ENST00000559257 SKILP12757 684 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 TTLL5Q6EMB2 1281 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 LEKR1Q6ZMV7 388 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 CCDC112Q8NEF3 446 aa10.03□□□□□ -0.8
USP3-211ENST00000559257 MMTAG2Q9BU76 263 aaKnown RBP10.03□□□□□ -0.8
USP3-211ENST00000559257 EIF3CLB5ME19 914 aaKnown RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 ATP8B1O43520 1251 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 NEBLO76041 1014 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 TBC1D8BQ0IIM8 1120 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 CADPS2Q86UW7 1296 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 GIMAP7Q8NHV1 300 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 DNAAF4Q8WXU2 420 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 EIF3CQ99613 913 aaKnown RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 GNL3LQ9NVN8 582 aaKnown RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 CHCHD3Q9NX63 227 aaKnown RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 MYBL2P10244 700 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 FOXD4L6Q3SYB3 417 aaPredicted RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 FOXD4L3Q6VB84 417 aaPredicted RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 DRAXINQ8NBI3 349 aaPredicted RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 PROCA1Q8NCQ7 364 aaPredicted RBP10.02□□□□□ -0.81
USP3-211ENST00000559257 EXOC4Q96A65 974 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 ZNF232Q9UNY5 417 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 PCDHGA4Q9Y5G9 962 aa10.02□□□□□ -0.81
USP3-211ENST00000559257 HFM1A2PYH4 1435 aa10.01□□□□□ -0.81
USP3-211ENST00000559257 FGD6Q6ZV73 1430 aa10.01□□□□□ -0.81
USP3-211ENST00000559257 UACAQ9BZF9 1416 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms