RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CDC45O75419 566 aa16.02■□□□□ 0.16
LDLR-207ENST00000558013 MTHFSDQ2M296 383 aaKnown RBP16.02■□□□□ 0.16
LDLR-207ENST00000558013 NUTM2GQ5VZR2 741 aa16.02■□□□□ 0.16
LDLR-207ENST00000558013 NECTIN2Q92692 538 aa16.02■□□□□ 0.16
LDLR-207ENST00000558013 TMEM2Q9UHN6 1383 aa16.02■□□□□ 0.16
LDLR-207ENST00000558013 TNRQ92752 1358 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 ATP10DQ9P241 1426 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 ANKRD44Q8N8A2 993 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 C3P01024 1663 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 TTC22Q5TAA0 569 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 TSHZ3Q63HK5 1081 aa16.01■□□□□ 0.15
LDLR-207ENST00000558013 ADAMTS13Q76LX8 1427 aa16■□□□□ 0.15
LDLR-207ENST00000558013 K7ELQ4 463 aaPredicted RBP16■□□□□ 0.15
LDLR-207ENST00000558013 SSFA2P28290 1259 aa16■□□□□ 0.15
LDLR-207ENST00000558013 MON2Q7Z3U7 1717 aa16■□□□□ 0.15
LDLR-207ENST00000558013 L1TD1Q5T7N2 865 aaKnown RBP16■□□□□ 0.15
LDLR-207ENST00000558013 TECPR2O15040 1411 aa16■□□□□ 0.15
LDLR-207ENST00000558013 SDSP20132 328 aa15.99■□□□□ 0.15
LDLR-207ENST00000558013 HDGFP51858 240 aaKnown RBP15.99■□□□□ 0.15
LDLR-207ENST00000558013 SIRT1Q96EB6 747 aa15.99■□□□□ 0.15
LDLR-207ENST00000558013 RTL1A6NKG5 1358 aa15.99■□□□□ 0.15
LDLR-207ENST00000558013 REREQ9P2R6 1566 aa15.99■□□□□ 0.15
LDLR-207ENST00000558013 RAB3GAP1Q15042 981 aa15.99■□□□□ 0.15
LDLR-207ENST00000558013 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.98■□□□□ 0.15
LDLR-207ENST00000558013 GAS2L3Q86XJ1 694 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 FAM43AQ8N2R8 423 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 TSPYL4Q9UJ04 414 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 OVOS2A0A0J9YW53 1432 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 OVOS2Q6IE36 1432 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 PLEKHG3A1L390 1219 aa15.98■□□□□ 0.15
LDLR-207ENST00000558013 USP6P35125 1406 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 PEAK1Q9H792 1746 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 PTPRUQ92729 1446 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 EYA1Q99502 592 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 CRB1P82279 1406 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 PKP1Q13835 747 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 USP26Q9BXU7 913 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 AMOTL2Q9Y2J4 779 aa15.97■□□□□ 0.15
LDLR-207ENST00000558013 DDX11L8A8MPP1 907 aa15.96■□□□□ 0.15
LDLR-207ENST00000558013 EXOC6BQ9Y2D4 811 aa15.96■□□□□ 0.14
LDLR-207ENST00000558013 RIMS1Q86UR5 1692 aaKnown RBP15.95■□□□□ 0.14
LDLR-207ENST00000558013 RPAP2Q8IXW5 612 aaPredicted RBP15.95■□□□□ 0.14
LDLR-207ENST00000558013 NGDNQ8NEJ9 315 aaKnown RBP15.95■□□□□ 0.14
LDLR-207ENST00000558013 AKAP12Q02952 1782 aa15.95■□□□□ 0.14
LDLR-207ENST00000558013 LTV1Q96GA3 475 aaPredicted RBP15.95■□□□□ 0.14
LDLR-207ENST00000558013 RTF1Q92541 710 aaKnown RBP15.94■□□□□ 0.14
LDLR-207ENST00000558013 CHAMP1Q96JM3 812 aa15.94■□□□□ 0.14
LDLR-207ENST00000558013 ITSN1Q15811 1721 aa15.94■□□□□ 0.14
LDLR-207ENST00000558013 AMPHP49418 695 aa15.94■□□□□ 0.14
LDLR-207ENST00000558013 EIF5BO60841 1220 aaKnown RBP15.93■□□□□ 0.14
LDLR-207ENST00000558013 AK9Q5TCS8 1911 aa15.93■□□□□ 0.14
LDLR-207ENST00000558013 GRPEL1Q9HAV7 217 aa15.93■□□□□ 0.14
LDLR-207ENST00000558013 KIAA0232Q92628 1395 aa15.93■□□□□ 0.14
LDLR-207ENST00000558013 ZGPATQ8N5A5 531 aaKnown RBP15.92■□□□□ 0.14
LDLR-207ENST00000558013 RBM33Q96EV2 1170 aaKnown RBP15.92■□□□□ 0.14
LDLR-207ENST00000558013 CIZ1Q9ULV3 898 aaPredicted RBP15.92■□□□□ 0.14
LDLR-207ENST00000558013 PTPRCP08575 1304 aa15.92■□□□□ 0.14
LDLR-207ENST00000558013 KIF24Q5T7B8 1368 aa15.92■□□□□ 0.14
LDLR-207ENST00000558013 GBP4Q96PP9 640 aa15.92■□□□□ 0.14
LDLR-207ENST00000558013 NRKQ7Z2Y5 1582 aa15.91■□□□□ 0.14
LDLR-207ENST00000558013 USP31Q70CQ4 1352 aa15.91■□□□□ 0.14
LDLR-207ENST00000558013 NLRP6P59044 892 aa15.91■□□□□ 0.14
LDLR-207ENST00000558013 USHBP1Q8N6Y0 703 aa15.91■□□□□ 0.14
LDLR-207ENST00000558013 PNMA6EA0A0J9YXQ4 647 aa15.91■□□□□ 0.14
LDLR-207ENST00000558013 CEP170BQ9Y4F5 1589 aaPredicted RBP15.91■□□□□ 0.14
LDLR-207ENST00000558013 SSH2Q76I76 1423 aa15.9■□□□□ 0.14
LDLR-207ENST00000558013 PLEKHG5O94827 1062 aa15.9■□□□□ 0.14
LDLR-207ENST00000558013 MRE11P49959 708 aa15.9■□□□□ 0.14
LDLR-207ENST00000558013 FKBP5Q13451 457 aaPredicted RBP15.9■□□□□ 0.14
LDLR-207ENST00000558013 UBR1Q8IWV7 1749 aa15.89■□□□□ 0.13
LDLR-207ENST00000558013 PDE1AP54750 535 aa15.89■□□□□ 0.13
LDLR-207ENST00000558013 BAG4O95429 457 aaKnown RBP15.89■□□□□ 0.13
LDLR-207ENST00000558013 RABEP1Q15276 862 aa15.89■□□□□ 0.13
LDLR-207ENST00000558013 FOXD4L5Q5VV16 416 aaPredicted RBP15.88■□□□□ 0.13
LDLR-207ENST00000558013 FOXD4L4Q8WXT5 416 aaPredicted RBP15.88■□□□□ 0.13
LDLR-207ENST00000558013 HAP1P54257 671 aaPredicted RBP15.88■□□□□ 0.13
LDLR-207ENST00000558013 FLIIQ13045 1269 aa15.88■□□□□ 0.13
LDLR-207ENST00000558013 IL17REQ8NFR9 667 aa15.88■□□□□ 0.13
LDLR-207ENST00000558013 PLEKHG1Q9ULL1 1385 aa15.88■□□□□ 0.13
LDLR-207ENST00000558013 FLT4P35916 1363 aa15.87■□□□□ 0.13
LDLR-207ENST00000558013 MCTP1Q6DN14 999 aa15.87■□□□□ 0.13
LDLR-207ENST00000558013 C14orf37Q86TY3 774 aa15.87■□□□□ 0.13
LDLR-207ENST00000558013 EID1Q9Y6B2 187 aa15.87■□□□□ 0.13
LDLR-207ENST00000558013 IGSF1Q8N6C5 1336 aa15.87■□□□□ 0.13
LDLR-207ENST00000558013 ARHGEF10O15013 1369 aa15.86■□□□□ 0.13
LDLR-207ENST00000558013 STK31Q9BXU1 1019 aa15.86■□□□□ 0.13
LDLR-207ENST00000558013 SBNO1A3KN83 1393 aa15.86■□□□□ 0.13
LDLR-207ENST00000558013 GNAI2P04899 355 aa15.86■□□□□ 0.13
LDLR-207ENST00000558013 NOL8Q76FK4 1167 aaKnown RBP15.86■□□□□ 0.13
LDLR-207ENST00000558013 RGPD1P0DJD0 1748 aa15.86■□□□□ 0.13
LDLR-207ENST00000558013 DDX49Q9Y6V7 483 aaKnown RBP15.85■□□□□ 0.13
LDLR-207ENST00000558013 ERBB4Q15303 1308 aa15.85■□□□□ 0.13
LDLR-207ENST00000558013 CCT4P50991 539 aaKnown RBP15.85■□□□□ 0.13
LDLR-207ENST00000558013 UNC5CLQ8IV45 518 aa15.85■□□□□ 0.13
LDLR-207ENST00000558013 PHAXQ9H814 394 aaKnown RBP15.85■□□□□ 0.13
LDLR-207ENST00000558013 LRRFIP2Q9Y608 721 aaKnown RBP15.85■□□□□ 0.13
LDLR-207ENST00000558013 KDRP35968 1356 aa15.85■□□□□ 0.13
LDLR-207ENST00000558013 HMMRO75330 724 aa15.85■□□□□ 0.13
LDLR-207ENST00000558013 HOXC9P31274 260 aa15.85■□□□□ 0.13
LDLR-207ENST00000558013 KCNA6P17658 529 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms