RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 DDX10Q13206 875 aaKnown RBP14.45□□□□□ -0.1
LINC00239-201ENST00000556973 SHANK3Q9BYB0 1731 aa14.45□□□□□ -0.1
LINC00239-201ENST00000556973 BCL11BQ9C0K0 894 aaPredicted RBP14.45□□□□□ -0.1
LINC00239-201ENST00000556973 IGSF1Q8N6C5 1336 aa14.44□□□□□ -0.1
LINC00239-201ENST00000556973 DIAPH1O60610 1272 aaKnown RBP14.43□□□□□ -0.1
LINC00239-201ENST00000556973 EN1Q05925 392 aaPredicted RBP14.43□□□□□ -0.1
LINC00239-201ENST00000556973 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.43□□□□□ -0.1
LINC00239-201ENST00000556973 SPG7Q9UQ90 795 aa14.43□□□□□ -0.1
LINC00239-201ENST00000556973 PKD1L3Q7Z443 1732 aa14.42□□□□□ -0.1
LINC00239-201ENST00000556973 PLSCR1O15162 318 aa14.42□□□□□ -0.1
LINC00239-201ENST00000556973 CAMKK2Q96RR4 588 aa14.42□□□□□ -0.1
LINC00239-201ENST00000556973 PCDH11XQ9BZA7 1347 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 PCDH11YQ9BZA8 1340 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 KCNQ2O43526 872 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 PPP2R1AP30153 589 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 PARD3Q8TEW0 1356 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 PLEKHG2Q9H7P9 1386 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 NHSQ6T4R5 1651 aa14.41□□□□□ -0.1
LINC00239-201ENST00000556973 EZH2Q15910 746 aaKnown RBP14.4□□□□□ -0.1
LINC00239-201ENST00000556973 SULT6B1Q6IMI4 303 aa14.4□□□□□ -0.1
LINC00239-201ENST00000556973 PTF1AQ7RTS3 328 aa14.4□□□□□ -0.1
LINC00239-201ENST00000556973 ACSBG1Q96GR2 724 aa14.4□□□□□ -0.1
LINC00239-201ENST00000556973 CFAP53Q96M91 514 aa14.4□□□□□ -0.1
LINC00239-201ENST00000556973 KAT6BQ8WYB5 2073 aa14.4□□□□□ -0.1
LINC00239-201ENST00000556973 RGPD3A6NKT7 1758 aaPredicted RBP14.39□□□□□ -0.11
LINC00239-201ENST00000556973 RGPD4Q7Z3J3 1758 aa14.39□□□□□ -0.11
LINC00239-201ENST00000556973 KDRP35968 1356 aa14.38□□□□□ -0.11
LINC00239-201ENST00000556973 CYP27B1O15528 508 aa14.38□□□□□ -0.11
LINC00239-201ENST00000556973 NKX1-1Q15270 411 aaPredicted RBP14.38□□□□□ -0.11
LINC00239-201ENST00000556973 AMOTQ4VCS5 1084 aa14.38□□□□□ -0.11
LINC00239-201ENST00000556973 PLEKHO1Q53GL0 409 aaPredicted RBP14.38□□□□□ -0.11
LINC00239-201ENST00000556973 IFNL2Q8IZJ0 200 aa14.38□□□□□ -0.11
LINC00239-201ENST00000556973 DOT1LQ8TEK3 1739 aa14.38□□□□□ -0.11
LINC00239-201ENST00000556973 BTAF1O14981 1849 aa14.37□□□□□ -0.11
LINC00239-201ENST00000556973 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
LINC00239-201ENST00000556973 PRIM1P49642 420 aaKnown RBP14.37□□□□□ -0.11
LINC00239-201ENST00000556973 RALBP1Q15311 655 aa14.37□□□□□ -0.11
LINC00239-201ENST00000556973 RREB1Q92766 1687 aa14.36□□□□□ -0.11
LINC00239-201ENST00000556973 AEBP1Q8IUX7 1158 aa14.36□□□□□ -0.11
LINC00239-201ENST00000556973 SYTL4Q96C24 671 aaPredicted RBP14.36□□□□□ -0.11
LINC00239-201ENST00000556973 COL3A1P02461 1466 aaPredicted RBP14.36□□□□□ -0.11
LINC00239-201ENST00000556973 U2SURPO15042 1029 aaKnown RBP14.35□□□□□ -0.11
LINC00239-201ENST00000556973 HMOX1P09601 288 aa14.35□□□□□ -0.11
LINC00239-201ENST00000556973 PHKG2P15735 406 aa14.35□□□□□ -0.11
LINC00239-201ENST00000556973 NUDCQ9Y266 331 aa14.35□□□□□ -0.11
LINC00239-201ENST00000556973 ITGB4P16144 1822 aa14.34□□□□□ -0.11
LINC00239-201ENST00000556973 NUP188Q5SRE5 1749 aa14.33□□□□□ -0.12
LINC00239-201ENST00000556973 HSP90AB1P08238 724 aaKnown RBP14.33□□□□□ -0.12
LINC00239-201ENST00000556973 NBPF14Q5TI25 921 aa14.33□□□□□ -0.12
LINC00239-201ENST00000556973 PROM2Q8N271 834 aa14.33□□□□□ -0.12
LINC00239-201ENST00000556973 TXNRD1Q16881 649 aa14.32□□□□□ -0.12
LINC00239-201ENST00000556973 C1orf141Q5JVX7 400 aa14.32□□□□□ -0.12
LINC00239-201ENST00000556973 ZNF530Q6P9A1 599 aaPredicted RBP14.32□□□□□ -0.12
LINC00239-201ENST00000556973 MPRIPQ6WCQ1 1025 aa14.32□□□□□ -0.12
LINC00239-201ENST00000556973 DCAF5Q96JK2 942 aa14.31□□□□□ -0.12
LINC00239-201ENST00000556973 TOGARAM1Q9Y4F4 1720 aa14.31□□□□□ -0.12
LINC00239-201ENST00000556973 AKAP4Q5JQC9 854 aa14.3□□□□□ -0.12
LINC00239-201ENST00000556973 MYBBP1AQ9BQG0 1328 aaKnown RBP14.3□□□□□ -0.12
LINC00239-201ENST00000556973 LY75O60449 1722 aa14.29□□□□□ -0.12
LINC00239-201ENST00000556973 ERVV-2B6SEH9 535 aa14.29□□□□□ -0.12
LINC00239-201ENST00000556973 U2AF1L5P0DN76 240 aaPredicted RBP14.29□□□□□ -0.12
LINC00239-201ENST00000556973 U2AF1Q01081 240 aaKnown RBP eCLIP14.29□□□□□ -0.12
LINC00239-201ENST00000556973 SLC27A3Q5K4L6 730 aa14.29□□□□□ -0.12
LINC00239-201ENST00000556973 FCHSD2O94868 740 aa14.28□□□□□ -0.12
LINC00239-201ENST00000556973 MTHFSDQ2M296 383 aaKnown RBP14.28□□□□□ -0.12
LINC00239-201ENST00000556973 PIGBQ92521 554 aa14.28□□□□□ -0.12
LINC00239-201ENST00000556973 PRKRIP1Q9H875 184 aaPredicted RBP14.28□□□□□ -0.12
LINC00239-201ENST00000556973 TMOD3Q9NYL9 352 aa14.28□□□□□ -0.12
LINC00239-201ENST00000556973 PSDA5PKW4 1024 aaPredicted RBP14.27□□□□□ -0.13
LINC00239-201ENST00000556973 HMGB2P26583 209 aaKnown RBP14.27□□□□□ -0.13
LINC00239-201ENST00000556973 R3HDM1Q15032 1099 aaKnown RBP14.27□□□□□ -0.13
LINC00239-201ENST00000556973 SMARCC1Q92922 1105 aaPredicted RBP14.27□□□□□ -0.13
LINC00239-201ENST00000556973 RSPH6AQ9H0K4 717 aa14.27□□□□□ -0.13
LINC00239-201ENST00000556973 VIRMAQ69YN4 1812 aaKnown RBP14.27□□□□□ -0.13
LINC00239-201ENST00000556973 SCN11AQ9UI33 1791 aa14.27□□□□□ -0.13
LINC00239-201ENST00000556973 GAS2L2Q8NHY3 880 aa14.26□□□□□ -0.13
LINC00239-201ENST00000556973 PRKAR2BP31323 418 aa14.25□□□□□ -0.13
LINC00239-201ENST00000556973 CABP4P57796 275 aa14.25□□□□□ -0.13
LINC00239-201ENST00000556973 PNNQ9H307 717 aaKnown RBP14.25□□□□□ -0.13
LINC00239-201ENST00000556973 LRRC4BQ9NT99 713 aa14.25□□□□□ -0.13
LINC00239-201ENST00000556973 KDM6AO15550 1401 aaPredicted RBP14.24□□□□□ -0.13
LINC00239-201ENST00000556973 SLC15A2Q16348 729 aa14.24□□□□□ -0.13
LINC00239-201ENST00000556973 PHACTR3Q96KR7 559 aa14.24□□□□□ -0.13
LINC00239-201ENST00000556973 STK32BQ9NY57 414 aa14.24□□□□□ -0.13
LINC00239-201ENST00000556973 CCNL1Q9UK58 526 aaPredicted RBP14.24□□□□□ -0.13
LINC00239-201ENST00000556973 NEFMP07197 916 aa14.23□□□□□ -0.13
LINC00239-201ENST00000556973 NFATC2IPQ8NCF5 419 aa14.23□□□□□ -0.13
LINC00239-201ENST00000556973 LGR6Q9HBX8 967 aa14.23□□□□□ -0.13
LINC00239-201ENST00000556973 ASAP1Q9ULH1 1129 aa14.23□□□□□ -0.13
LINC00239-201ENST00000556973 PALLDQ8WX93 1383 aa14.22□□□□□ -0.13
LINC00239-201ENST00000556973 GNAT3A8MTJ3 354 aa14.22□□□□□ -0.13
LINC00239-201ENST00000556973 RNMTO43148 476 aaKnown RBP14.22□□□□□ -0.13
LINC00239-201ENST00000556973 ANO8Q9HCE9 1232 aaPredicted RBP14.22□□□□□ -0.13
LINC00239-201ENST00000556973 ATG3Q9NT62 314 aa14.22□□□□□ -0.13
LINC00239-201ENST00000556973 ADAMTS7Q9UKP4 1686 aa14.22□□□□□ -0.13
LINC00239-201ENST00000556973 PAPPAQ13219 1627 aa14.22□□□□□ -0.13
LINC00239-201ENST00000556973 TAF1LQ8IZX4 1826 aa14.21□□□□□ -0.13
LINC00239-201ENST00000556973 KCNQ4P56696 695 aa14.21□□□□□ -0.13
LINC00239-201ENST00000556973 SLC52A2Q9HAB3 445 aa14.21□□□□□ -0.13
LINC00239-201ENST00000556973 MAP3K5Q99683 1374 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms