RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 MYT1Q01538 1121 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 ESCO1Q5FWF5 840 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 ARHGAP45Q92619 1136 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 ZBTB7BO15156 539 aaPredicted RBP12.84□□□□□ -0.35
TMEM260-211ENST00000556648 SLC4A3P48751 1232 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 XPCQ01831 940 aaPredicted RBP12.84□□□□□ -0.35
TMEM260-211ENST00000556648 NBR1Q14596 966 aa12.84□□□□□ -0.35
TMEM260-211ENST00000556648 ORAI2Q96SN7 254 aa12.83□□□□□ -0.36
TMEM260-211ENST00000556648 PLEKHG5O94827 1062 aa12.83□□□□□ -0.36
TMEM260-211ENST00000556648 SMC5Q8IY18 1101 aa12.83□□□□□ -0.36
TMEM260-211ENST00000556648 RGPD2P0DJD1 1756 aa12.82□□□□□ -0.36
TMEM260-211ENST00000556648 MSH6P52701 1360 aa12.82□□□□□ -0.36
TMEM260-211ENST00000556648 KIAA0232Q92628 1395 aa12.82□□□□□ -0.36
TMEM260-211ENST00000556648 ZBTB7CA1YPR0 619 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 DDRGK1Q96HY6 314 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 RTL1A6NKG5 1358 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 KIF24Q5T7B8 1368 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 PSME1Q06323 249 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 GAS2L2Q8NHY3 880 aa12.81□□□□□ -0.36
TMEM260-211ENST00000556648 API5Q9BZZ5 524 aaKnown RBP12.81□□□□□ -0.36
TMEM260-211ENST00000556648 SIRT2Q8IXJ6 389 aa12.8□□□□□ -0.36
TMEM260-211ENST00000556648 RTF1Q92541 710 aaKnown RBP12.8□□□□□ -0.36
TMEM260-211ENST00000556648 TSPYL4Q9UJ04 414 aa12.8□□□□□ -0.36
TMEM260-211ENST00000556648 TRPM3Q9HCF6 1732 aaPredicted RBP12.79□□□□□ -0.36
TMEM260-211ENST00000556648 NUCB1Q02818 461 aa12.79□□□□□ -0.36
TMEM260-211ENST00000556648 FAM208AQ9UK61 1670 aaKnown RBP12.78□□□□□ -0.36
TMEM260-211ENST00000556648 IP6K1Q92551 441 aa12.78□□□□□ -0.36
TMEM260-211ENST00000556648 LNPKQ9C0E8 428 aa12.78□□□□□ -0.36
TMEM260-211ENST00000556648 MAP3K5Q99683 1374 aa12.78□□□□□ -0.36
TMEM260-211ENST00000556648 STRCP1A6NGW2 1772 aa12.78□□□□□ -0.36
TMEM260-211ENST00000556648 G2E3Q7L622 706 aa12.78□□□□□ -0.36
TMEM260-211ENST00000556648 SLIT3O75094 1523 aa12.77□□□□□ -0.37
TMEM260-211ENST00000556648 PHRF1Q9P1Y6 1649 aaKnown RBP12.77□□□□□ -0.37
TMEM260-211ENST00000556648 GNAT3A8MTJ3 354 aa12.77□□□□□ -0.37
TMEM260-211ENST00000556648 NBPF6Q5VWK0 638 aa12.77□□□□□ -0.37
TMEM260-211ENST00000556648 PROSER2Q86WR7 435 aaPredicted RBP12.77□□□□□ -0.37
TMEM260-211ENST00000556648 IL17REQ8NFR9 667 aa12.77□□□□□ -0.37
TMEM260-211ENST00000556648 NBPF4Q96M43 638 aa12.77□□□□□ -0.37
TMEM260-211ENST00000556648 ADRA2BP18089 450 aa12.76□□□□□ -0.37
TMEM260-211ENST00000556648 LRRC59Q96AG4 307 aaKnown RBP12.76□□□□□ -0.37
TMEM260-211ENST00000556648 C1orf167Q5SNV9 1468 aa12.76□□□□□ -0.37
TMEM260-211ENST00000556648 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
TMEM260-211ENST00000556648 INTS3Q68E01 1043 aaKnown RBP12.76□□□□□ -0.37
TMEM260-211ENST00000556648 CHD1LQ86WJ1 897 aa12.76□□□□□ -0.37
TMEM260-211ENST00000556648 DNAJC5Q9H3Z4 198 aa12.76□□□□□ -0.37
TMEM260-211ENST00000556648 ATP10DQ9P241 1426 aa12.75□□□□□ -0.37
TMEM260-211ENST00000556648 ANKRD45Q5TZF3 282 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 LMOD2Q6P5Q4 547 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 NECTIN2Q92692 538 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 KIF1AQ12756 1690 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 F6X3S4 739 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 HTATSF1O43719 755 aaKnown RBP12.74□□□□□ -0.37
TMEM260-211ENST00000556648 PTPRCP08575 1304 aa12.74□□□□□ -0.37
TMEM260-211ENST00000556648 MEIS3Q99687 375 aa12.73□□□□□ -0.37
TMEM260-211ENST00000556648 CHMP4BQ9H444 224 aaKnown RBP12.73□□□□□ -0.37
TMEM260-211ENST00000556648 PXDNQ92626 1479 aa12.73□□□□□ -0.37
TMEM260-211ENST00000556648 MED1Q15648 1581 aaPredicted RBP12.73□□□□□ -0.37
TMEM260-211ENST00000556648 GCP02774 474 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 KRT28Q7Z3Y7 464 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 KCNH5Q8NCM2 988 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 DDX17Q92841 729 aaKnown RBP12.72□□□□□ -0.37
TMEM260-211ENST00000556648 TBC1D32Q96NH3 1257 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 RGPD5Q99666 1765 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 LMO7Q8WWI1 1683 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 ALS2Q96Q42 1657 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 HAP1P54257 671 aaPredicted RBP12.72□□□□□ -0.37
TMEM260-211ENST00000556648 ARHGEF25Q86VW2 580 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 GCC1Q96CN9 775 aa12.72□□□□□ -0.37
TMEM260-211ENST00000556648 MFAP1P55081 439 aaKnown RBP12.71□□□□□ -0.37
TMEM260-211ENST00000556648 LGR6Q9HBX8 967 aa12.71□□□□□ -0.37
TMEM260-211ENST00000556648 MST1RQ04912 1400 aa12.71□□□□□ -0.37
TMEM260-211ENST00000556648 SLC4A10Q6U841 1118 aa12.71□□□□□ -0.38
TMEM260-211ENST00000556648 CAMTA1Q9Y6Y1 1673 aa12.71□□□□□ -0.38
TMEM260-211ENST00000556648 TMEM94Q12767 1356 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 KDM3BQ7LBC6 1761 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 TAF7Q15545 349 aaPredicted RBP12.7□□□□□ -0.38
TMEM260-211ENST00000556648 CEP85Q6P2H3 762 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 ANKRD44Q8N8A2 993 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 ANKRD24Q8TF21 1146 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 DAXXQ9UER7 740 aaPredicted RBP12.7□□□□□ -0.38
TMEM260-211ENST00000556648 AXIN2Q9Y2T1 843 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 CEMIPQ8WUJ3 1361 aa12.7□□□□□ -0.38
TMEM260-211ENST00000556648 BCL11AQ9H165 835 aa12.69□□□□□ -0.38
TMEM260-211ENST00000556648 C19orf44Q9H6X5 657 aa12.69□□□□□ -0.38
TMEM260-211ENST00000556648 NCAPD2Q15021 1401 aa12.69□□□□□ -0.38
TMEM260-211ENST00000556648 KCNQ3O43525 872 aa12.69□□□□□ -0.38
TMEM260-211ENST00000556648 HSPA2P54652 639 aa12.69□□□□□ -0.38
TMEM260-211ENST00000556648 ZNF530Q6P9A1 599 aaPredicted RBP12.69□□□□□ -0.38
TMEM260-211ENST00000556648 FLIIQ13045 1269 aa12.68□□□□□ -0.38
TMEM260-211ENST00000556648 STK31Q9BXU1 1019 aa12.68□□□□□ -0.38
TMEM260-211ENST00000556648 DCTPP1Q9H773 170 aa12.68□□□□□ -0.38
TMEM260-211ENST00000556648 UPF2Q9HAU5 1272 aaKnown RBP12.68□□□□□ -0.38
TMEM260-211ENST00000556648 N4BP2Q86UW6 1770 aaPredicted RBP12.67□□□□□ -0.38
TMEM260-211ENST00000556648 ZC3H6P61129 1189 aaKnown RBP12.67□□□□□ -0.38
TMEM260-211ENST00000556648 CCDC30Q5VVM6 783 aa12.67□□□□□ -0.38
TMEM260-211ENST00000556648 C16orf71Q8IYS4 520 aaPredicted RBP12.67□□□□□ -0.38
TMEM260-211ENST00000556648 OTUD7AQ8TE49 926 aaPredicted RBP12.67□□□□□ -0.38
TMEM260-211ENST00000556648 SMARCA5O60264 1052 aaPredicted RBP12.66□□□□□ -0.38
TMEM260-211ENST00000556648 FKBP5Q13451 457 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms