RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 ZNF316A6NFI3 1004 aaPredicted RBP19.22■□□□□ 0.67
SHMT2-217ENST00000555116 TRIM37O94972 964 aa19.22■□□□□ 0.67
SHMT2-217ENST00000555116 PPP2R1AP30153 589 aa19.22■□□□□ 0.67
SHMT2-217ENST00000555116 ZCRB1Q8TBF4 217 aaKnown RBP19.22■□□□□ 0.67
SHMT2-217ENST00000555116 SF3B2Q13435 895 aaKnown RBP19.19■□□□□ 0.66
SHMT2-217ENST00000555116 DDX54Q8TDD1 881 aaKnown RBP19.19■□□□□ 0.66
SHMT2-217ENST00000555116 NHSQ6T4R5 1651 aa19.18■□□□□ 0.66
SHMT2-217ENST00000555116 DIAPH1O60610 1272 aaKnown RBP19.18■□□□□ 0.66
SHMT2-217ENST00000555116 DEFB132Q7Z7B7 95 aa19.18■□□□□ 0.66
SHMT2-217ENST00000555116 AEBP1Q8IUX7 1158 aa19.17■□□□□ 0.66
SHMT2-217ENST00000555116 KDRP35968 1356 aa19.17■□□□□ 0.66
SHMT2-217ENST00000555116 PTF1AQ7RTS3 328 aa19.16■□□□□ 0.66
SHMT2-217ENST00000555116 PLEKHG2Q9H7P9 1386 aa19.16■□□□□ 0.66
SHMT2-217ENST00000555116 DOT1LQ8TEK3 1739 aa19.15■□□□□ 0.66
SHMT2-217ENST00000555116 SULT6B1Q6IMI4 303 aa19.15■□□□□ 0.66
SHMT2-217ENST00000555116 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHMT2-217ENST00000555116 PCDH11XQ9BZA7 1347 aa19.15■□□□□ 0.66
SHMT2-217ENST00000555116 PCDH11YQ9BZA8 1340 aa19.15■□□□□ 0.66
SHMT2-217ENST00000555116 CYP27B1O15528 508 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 BAG6P46379 1132 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 BCL11BQ9C0K0 894 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-217ENST00000555116 BTAF1O14981 1849 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 RALBP1Q15311 655 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 CFAP53Q96M91 514 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 SPG7Q9UQ90 795 aa19.14■□□□□ 0.65
SHMT2-217ENST00000555116 KCNQ2O43526 872 aa19.13■□□□□ 0.65
SHMT2-217ENST00000555116 APBA3O96018 575 aa19.13■□□□□ 0.65
SHMT2-217ENST00000555116 ACSBG1Q96GR2 724 aa19.13■□□□□ 0.65
SHMT2-217ENST00000555116 RGPD3A6NKT7 1758 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-217ENST00000555116 RGPD4Q7Z3J3 1758 aa19.12■□□□□ 0.65
SHMT2-217ENST00000555116 EN1Q05925 392 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-217ENST00000555116 TOGARAM1Q9Y4F4 1720 aa19.11■□□□□ 0.65
SHMT2-217ENST00000555116 ITGB4P16144 1822 aa19.11■□□□□ 0.65
SHMT2-217ENST00000555116 HMOX1P09601 288 aa19.1■□□□□ 0.65
SHMT2-217ENST00000555116 CAMKK2Q96RR4 588 aa19.1■□□□□ 0.65
SHMT2-217ENST00000555116 RREB1Q92766 1687 aa19.1■□□□□ 0.65
SHMT2-217ENST00000555116 U2SURPO15042 1029 aaKnown RBP19.09■□□□□ 0.65
SHMT2-217ENST00000555116 NKX1-1Q15270 411 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-217ENST00000555116 PLEKHO1Q53GL0 409 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-217ENST00000555116 EZH2Q15910 746 aaKnown RBP19.08■□□□□ 0.65
SHMT2-217ENST00000555116 AMOTQ4VCS5 1084 aa19.08■□□□□ 0.65
SHMT2-217ENST00000555116 PHKG2P15735 406 aa19.07■□□□□ 0.64
SHMT2-217ENST00000555116 PRIM1P49642 420 aaKnown RBP19.07■□□□□ 0.64
SHMT2-217ENST00000555116 MYBBP1AQ9BQG0 1328 aaKnown RBP19.07■□□□□ 0.64
SHMT2-217ENST00000555116 PLSCR1O15162 318 aa19.07■□□□□ 0.64
SHMT2-217ENST00000555116 IFNL2Q8IZJ0 200 aa19.07■□□□□ 0.64
SHMT2-217ENST00000555116 PRKRIP1Q9H875 184 aaPredicted RBP19.07■□□□□ 0.64
SHMT2-217ENST00000555116 NUP188Q5SRE5 1749 aa19.06■□□□□ 0.64
SHMT2-217ENST00000555116 NUDCQ9Y266 331 aa19.06■□□□□ 0.64
SHMT2-217ENST00000555116 VIRMAQ69YN4 1812 aaKnown RBP19.06■□□□□ 0.64
SHMT2-217ENST00000555116 ZNF530Q6P9A1 599 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-217ENST00000555116 DIEXFQ68CQ4 756 aaKnown RBP19.03■□□□□ 0.64
SHMT2-217ENST00000555116 SYTL4Q96C24 671 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-217ENST00000555116 RSPH6AQ9H0K4 717 aa19.03■□□□□ 0.64
SHMT2-217ENST00000555116 SCN11AQ9UI33 1791 aa19.03■□□□□ 0.64
SHMT2-217ENST00000555116 U2AF1L5P0DN76 240 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-217ENST00000555116 U2AF1Q01081 240 aaKnown RBP eCLIP19.02■□□□□ 0.64
SHMT2-217ENST00000555116 LY75O60449 1722 aa19.02■□□□□ 0.64
SHMT2-217ENST00000555116 PROM2Q8N271 834 aa19.01■□□□□ 0.63
SHMT2-217ENST00000555116 KDM6AO15550 1401 aaPredicted RBP19.01■□□□□ 0.63
SHMT2-217ENST00000555116 MTHFSDQ2M296 383 aaKnown RBP19.01■□□□□ 0.63
SHMT2-217ENST00000555116 HSP90AB1P08238 724 aaKnown RBP19■□□□□ 0.63
SHMT2-217ENST00000555116 C1orf141Q5JVX7 400 aa19■□□□□ 0.63
SHMT2-217ENST00000555116 PRKAR2BP31323 418 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 ADAMTS7Q9UKP4 1686 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 FCHSD2O94868 740 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 TXNRD1Q16881 649 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 MPRIPQ6WCQ1 1025 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 DCAF5Q96JK2 942 aa18.99■□□□□ 0.63
SHMT2-217ENST00000555116 AKAP4Q5JQC9 854 aa18.98■□□□□ 0.63
SHMT2-217ENST00000555116 PIGBQ92521 554 aa18.97■□□□□ 0.63
SHMT2-217ENST00000555116 PHACTR3Q96KR7 559 aa18.97■□□□□ 0.63
SHMT2-217ENST00000555116 ERVV-2B6SEH9 535 aa18.97■□□□□ 0.63
SHMT2-217ENST00000555116 TMOD3Q9NYL9 352 aa18.95■□□□□ 0.62
SHMT2-217ENST00000555116 GAS2L2Q8NHY3 880 aa18.94■□□□□ 0.62
SHMT2-217ENST00000555116 PAPPAQ13219 1627 aa18.94■□□□□ 0.62
SHMT2-217ENST00000555116 DLG5Q8TDM6 1919 aa18.93■□□□□ 0.62
SHMT2-217ENST00000555116 LRRC4BQ9NT99 713 aa18.93■□□□□ 0.62
SHMT2-217ENST00000555116 RNMTO43148 476 aaKnown RBP18.92■□□□□ 0.62
SHMT2-217ENST00000555116 PLEKHF1Q96S99 279 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 LGR6Q9HBX8 967 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 MAP3K5Q99683 1374 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 TAF1LQ8IZX4 1826 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 MRC1P22897 1456 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 SLC27A3Q5K4L6 730 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 PALLDQ8WX93 1383 aa18.92■□□□□ 0.62
SHMT2-217ENST00000555116 CABP4P57796 275 aa18.91■□□□□ 0.62
SHMT2-217ENST00000555116 SMARCC1Q92922 1105 aaPredicted RBP18.91■□□□□ 0.62
SHMT2-217ENST00000555116 ANO8Q9HCE9 1232 aaPredicted RBP18.91■□□□□ 0.62
SHMT2-217ENST00000555116 ANP32CO43423 234 aa18.9■□□□□ 0.62
SHMT2-217ENST00000555116 NBPF14Q5TI25 921 aa18.9■□□□□ 0.62
SHMT2-217ENST00000555116 ASAP1Q9ULH1 1129 aa18.9■□□□□ 0.62
SHMT2-217ENST00000555116 SIPA1L3O60292 1781 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-217ENST00000555116 PSDA5PKW4 1024 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-217ENST00000555116 GNAT3A8MTJ3 354 aa18.9■□□□□ 0.62
SHMT2-217ENST00000555116 ATG3Q9NT62 314 aa18.9■□□□□ 0.62
SHMT2-217ENST00000555116 KCNQ4P56696 695 aa18.89■□□□□ 0.61
SHMT2-217ENST00000555116 R3HDM1Q15032 1099 aaKnown RBP18.89■□□□□ 0.61
SHMT2-217ENST00000555116 NFATC2IPQ8NCF5 419 aa18.89■□□□□ 0.61
SHMT2-217ENST00000555116 C5P01031 1676 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms