RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 COG3Q96JB2 828 aa16.99■□□□□ 0.31
VPS33A-208ENST00000543633 THUMPD2Q9BTF0 503 aaKnown RBP16.99■□□□□ 0.31
VPS33A-208ENST00000543633 TOPAZ1Q8N9V7 1692 aa16.99■□□□□ 0.31
VPS33A-208ENST00000543633 CD2BP2O95400 341 aaKnown RBP16.98■□□□□ 0.31
VPS33A-208ENST00000543633 KLHL40Q2TBA0 621 aa16.98■□□□□ 0.31
VPS33A-208ENST00000543633 C8orf58Q8NAV2 365 aa16.98■□□□□ 0.31
VPS33A-208ENST00000543633 PLEKHG1Q9ULL1 1385 aa16.98■□□□□ 0.31
VPS33A-208ENST00000543633 PTPRCP08575 1304 aa16.98■□□□□ 0.31
VPS33A-208ENST00000543633 ZNF142P52746 1687 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-208ENST00000543633 NUCB2P80303 420 aa16.97■□□□□ 0.31
VPS33A-208ENST00000543633 ADAMTS13Q76LX8 1427 aa16.97■□□□□ 0.31
VPS33A-208ENST00000543633 METP08581 1390 aa16.97■□□□□ 0.31
VPS33A-208ENST00000543633 ESPNB1AK53 854 aa16.97■□□□□ 0.31
VPS33A-208ENST00000543633 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
VPS33A-208ENST00000543633 GAS2L2Q8NHY3 880 aa16.97■□□□□ 0.31
VPS33A-208ENST00000543633 SETD1BQ9UPS6 1966 aaKnown RBP16.97■□□□□ 0.31
VPS33A-208ENST00000543633 NME9Q86XW9 330 aa16.96■□□□□ 0.31
VPS33A-208ENST00000543633 UBE2Q2Q8WVN8 375 aa16.96■□□□□ 0.31
VPS33A-208ENST00000543633 ARXQ96QS3 562 aa16.96■□□□□ 0.31
VPS33A-208ENST00000543633 TXNDC2Q86VQ3 553 aa16.96■□□□□ 0.3
VPS33A-208ENST00000543633 CCDC173Q0VFZ6 552 aa16.95■□□□□ 0.3
VPS33A-208ENST00000543633 CASC1Q6TDU7 716 aa16.95■□□□□ 0.3
VPS33A-208ENST00000543633 WAPLQ7Z5K2 1190 aa16.95■□□□□ 0.3
VPS33A-208ENST00000543633 CWC22Q9HCG8 908 aaKnown RBP16.95■□□□□ 0.3
VPS33A-208ENST00000543633 TRIM44Q96DX7 344 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-208ENST00000543633 BAG4O95429 457 aaKnown RBP16.94■□□□□ 0.3
VPS33A-208ENST00000543633 CYP2E1P05181 493 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-208ENST00000543633 SSFA2P28290 1259 aa16.94■□□□□ 0.3
VPS33A-208ENST00000543633 PPP1R9BQ96SB3 815 aa16.94■□□□□ 0.3
VPS33A-208ENST00000543633 USP26Q9BXU7 913 aa16.94■□□□□ 0.3
VPS33A-208ENST00000543633 CCDC61Q9Y6R9 512 aa16.94■□□□□ 0.3
VPS33A-208ENST00000543633 RTL1A6NKG5 1358 aa16.93■□□□□ 0.3
VPS33A-208ENST00000543633 GAS2L3Q86XJ1 694 aa16.93■□□□□ 0.3
VPS33A-208ENST00000543633 NUDT16Q96DE0 195 aaKnown RBP16.92■□□□□ 0.3
VPS33A-208ENST00000543633 EID1Q9Y6B2 187 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 N4BP2Q86UW6 1770 aaPredicted RBP16.92■□□□□ 0.3
VPS33A-208ENST00000543633 OVOS2A0A0J9YW53 1432 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 OVOS2Q6IE36 1432 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 TUBGCP6Q96RT7 1819 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 ELL2O00472 640 aaPredicted RBP16.92■□□□□ 0.3
VPS33A-208ENST00000543633 CHL1O00533 1208 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 FBLN1P23142 703 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 CEP85Q6P2H3 762 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
VPS33A-208ENST00000543633 FMN2Q9NZ56 1722 aa16.92■□□□□ 0.3
VPS33A-208ENST00000543633 ZNF445P59923 1031 aa16.91■□□□□ 0.3
VPS33A-208ENST00000543633 MSH6P52701 1360 aa16.91■□□□□ 0.3
VPS33A-208ENST00000543633 REC8O95072 547 aa16.91■□□□□ 0.3
VPS33A-208ENST00000543633 ST18O60284 1047 aa16.9■□□□□ 0.3
VPS33A-208ENST00000543633 ARHGEF10O15013 1369 aa16.9■□□□□ 0.3
VPS33A-208ENST00000543633 HMMRO75330 724 aa16.89■□□□□ 0.29
VPS33A-208ENST00000543633 ANP32BQ92688 251 aaKnown RBP16.89■□□□□ 0.29
VPS33A-208ENST00000543633 NAP1L5Q96NT1 182 aaPredicted RBP16.89■□□□□ 0.29
VPS33A-208ENST00000543633 OSBPL3Q9H4L5 887 aa16.89■□□□□ 0.29
VPS33A-208ENST00000543633 DDX49Q9Y6V7 483 aaKnown RBP16.89■□□□□ 0.29
VPS33A-208ENST00000543633 PEAK1Q9H792 1746 aa16.89■□□□□ 0.29
VPS33A-208ENST00000543633 TTC21BQ7Z4L5 1316 aa16.89■□□□□ 0.29
VPS33A-208ENST00000543633 CRB1P82279 1406 aa16.88■□□□□ 0.29
VPS33A-208ENST00000543633 LRRC37A3O60309 1634 aa16.88■□□□□ 0.29
VPS33A-208ENST00000543633 FAM83GA6ND36 823 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 NASPP49321 788 aaPredicted RBP16.87■□□□□ 0.29
VPS33A-208ENST00000543633 ERBB4Q15303 1308 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 SDSP20132 328 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
VPS33A-208ENST00000543633 RRS1Q15050 365 aaKnown RBP16.87■□□□□ 0.29
VPS33A-208ENST00000543633 HS1BP3Q53T59 392 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 SLC26A8Q96RN1 970 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 FOXD4L1Q9NU39 408 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 ZRANB1Q9UGI0 708 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 TBX22Q9Y458 520 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 USP31Q70CQ4 1352 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 DIP2AQ14689 1571 aa16.87■□□□□ 0.29
VPS33A-208ENST00000543633 PTPRUQ92729 1446 aa16.86■□□□□ 0.29
VPS33A-208ENST00000543633 AK9Q5TCS8 1911 aa16.86■□□□□ 0.29
VPS33A-208ENST00000543633 FAM208AQ9UK61 1670 aaKnown RBP16.86■□□□□ 0.29
VPS33A-208ENST00000543633 CACNA1FO60840 1977 aa16.85■□□□□ 0.29
VPS33A-208ENST00000543633 ERC2O15083 957 aa16.85■□□□□ 0.29
VPS33A-208ENST00000543633 LMBRD1Q9NUN5 540 aa16.85■□□□□ 0.29
VPS33A-208ENST00000543633 SSH2Q76I76 1423 aa16.84■□□□□ 0.29
VPS33A-208ENST00000543633 MCM2P49736 904 aa16.84■□□□□ 0.29
VPS33A-208ENST00000543633 CCT4P50991 539 aaKnown RBP16.84■□□□□ 0.29
VPS33A-208ENST00000543633 DCTN1Q14203 1278 aa16.84■□□□□ 0.29
VPS33A-208ENST00000543633 USP6P35125 1406 aa16.84■□□□□ 0.29
VPS33A-208ENST00000543633 TPM2P07951 284 aa16.84■□□□□ 0.29
VPS33A-208ENST00000543633 ROBO2Q9HCK4 1378 aa16.83■□□□□ 0.29
VPS33A-208ENST00000543633 PRR36Q9H6K5 1346 aa16.83■□□□□ 0.28
VPS33A-208ENST00000543633 RRP9O43818 475 aaKnown RBP16.83■□□□□ 0.28
VPS33A-208ENST00000543633 SULT6B1Q6IMI4 303 aa16.83■□□□□ 0.28
VPS33A-208ENST00000543633 ZSCAN30Q86W11 494 aa16.83■□□□□ 0.28
VPS33A-208ENST00000543633 XRN1Q8IZH2 1706 aaKnown RBP16.82■□□□□ 0.28
VPS33A-208ENST00000543633 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-208ENST00000543633 SOS1Q07889 1333 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-208ENST00000543633 PXDNLA1KZ92 1463 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 PLEKHG3A1L390 1219 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 MCTP1Q6DN14 999 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 ANKLE2Q86XL3 938 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 C16orf71Q8IYS4 520 aaPredicted RBP16.82■□□□□ 0.28
VPS33A-208ENST00000543633 IL17RAQ96F46 866 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 MEIS3Q99687 375 aa16.82■□□□□ 0.28
VPS33A-208ENST00000543633 EPB41L2O43491 1005 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms